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Report for CCDS23702.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23702.1 Public Mus musculus 10 Pex3 23 108 98 CCDS HistoryNCBI Gene:56535Re-query CCDS DB by CCDS ID:23702.1Re-query CCDS DB by GeneID:56535See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23702.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000019945.14 ENSMUSP00000019945.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000019945.14Link to Ensembl Protein Viewer:ENSMUSP00000019945.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000019945Re-query CCDS DB by Protein ID:ENSMUSP00000019945
Original member Current member NCBI NM_019961.3 NP_064345.1 Accepted alive Link to Nucleotide Sequence:NM_019961.3Link to Protein Sequence:NP_064345.1Re-query CCDS DB by Nucleotide ID:NM_019961Re-query CCDS DB by Protein ID:NP_064345Link to BLAST:NP_064345.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_064345.1 372 Q9QXY9 372 100% 0 0

Chromosomal Locations for CCDS 23702.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 13524885 13524968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 13527741 13527837 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 13531258 13531380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 13532340 13532410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 13534672 13534837 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 13535555 13535609 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 13535709 13535775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 13535943 13536067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 13537431 13537474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 13542624 13542705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 13546350 13546481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 13552826 13552898 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1119 nt):
ATGCTGAGATCAATGTGGAATTTTCTGAAACGTCACAAAAAGAAATGCATCTTCCTGGGCACAGTCCTCG
GAGGAGTATATATCCTGGGAAAATATGGACAGAAAAAAATTAGAGAAATACAAGAAAGAGAAGCTGCAGA
ATACATTGCCCAAGCTCGGCGACAGTACCATTTTGAAAGCAACCAGAGGACTTGCAATATGACAGTGCTG
TCCATGCTGCCGACACTGAGAGAGGCCTTAATGCAGCAGCTCAACTCGGAGAGTCTCACAGCTCTGTTGA
AAAGCAGGCCTTCAAACAAGCTGGAAATATGGGAGGACCTAAAGATAATAAGTTTCACAAGAAGTATTGT
AGCTGTATATAGCACGTGTATGCTGGTGGTTCTTTTGCGAGTCCAGTTAAACATAATTGGTGGATATATT
TACCTGGATAATGCAACAGTTGGCAAAAATGGCACTACCGTTCTTGCTCCTCCGGATGTACAGCAGCAGT
ATTTATCAAGTATTCAACACCTCCTTGGAGACGGCCTCACAGAGTTGGTCACTGTCATTAAACAAGCTGT
ACAAAGGATCTTAGGAAGTGTCTCTCTTAAACATTCCTTGTCCCTTTTGGACTTGGAGCAAAAACTAAAA
GAAATCAGAATTCTTGTTGAGCAACATCAGTCTTCTTGGAATGATAAAGATGTGTCCAGGTCTTCACTGT
GCCAGTACATGATGCCAGATGAGGAGACACCATTGGCAGCTCAGGCCTATGGGCTTTCTCACAGAGATAT
CACCACTATTAAACTTCTCAATGAGACAAGAGACATGCTGGAAAGTCCAGATTTTAGTACAGTTTTGAAT
ACCTGTCTAAACAGAGGCTTCAGTCGGCTTCTAGACAACATGGCCGAATTCTTTCGACCCACTGAGCAGG
ACCTACAGCATGGTAACTCCATAAACAGTCTGTCCAGTGTCAGCCTGCCTTTAGCTAAGATAATTCCCAT
AGTGAACGGGCAGATCCATTCAGTTTGCAGTGAGACACCTAGTCATTTTGTGCAGGATCTGCTGATGATG
GAACAGGTGAAAGACTTTGCTGCTAACGTGTACGAAGCGTTTAGTACCCCCCAACAACTGGAGAAATGA

Translation (372 aa):
MLRSMWNFLKRHKKKCIFLGTVLGGVYILGKYGQKKIREIQEREAAEYIAQARRQYHFESNQRTCNMTVL
SMLPTLREALMQQLNSESLTALLKSRPSNKLEIWEDLKIISFTRSIVAVYSTCMLVVLLRVQLNIIGGYI
YLDNATVGKNGTTVLAPPDVQQQYLSSIQHLLGDGLTELVTVIKQAVQRILGSVSLKHSLSLLDLEQKLK
EIRILVEQHQSSWNDKDVSRSSLCQYMMPDEETPLAAQAYGLSHRDITTIKLLNETRDMLESPDFSTVLN
TCLNRGFSRLLDNMAEFFRPTEQDLQHGNSINSLSSVSLPLAKIIPIVNGQIHSVCSETPSHFVQDLLMM
EQVKDFAANVYEAFSTPQQLEK


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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