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Report for CCDS23698.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23698.1 Public Mus musculus 10 Epm2a 23 108 98 CCDS HistoryNCBI Gene:13853Re-query CCDS DB by CCDS ID:23698.1Re-query CCDS DB by GeneID:13853See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23698.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000069106.4 ENSMUSP00000066050.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000069106.4Link to Ensembl Protein Viewer:ENSMUSP00000066050.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000069106Re-query CCDS DB by Protein ID:ENSMUSP00000066050
Original member NCBI NM_010146.2 NP_034276.2 Updated not alive Link to Nucleotide Sequence:NM_010146.2Link to Protein Sequence:NP_034276.2Re-query CCDS DB by Nucleotide ID:NM_010146Re-query CCDS DB by Protein ID:NP_034276
Current member NCBI NM_010146.3 NP_034276.2 Accepted alive Link to Nucleotide Sequence:NM_010146.3Link to Protein Sequence:NP_034276.2Re-query CCDS DB by Nucleotide ID:NM_010146Re-query CCDS DB by Protein ID:NP_034276Link to BLAST:NP_034276.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034276.2 330 Q9WUA5 330 100% 0 0

Chromosomal Locations for CCDS 23698.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 11343471 11343768 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 11390811 11390985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 11448642 11448883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 11457140 11457417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (993 nt):
ATGCTCTTCCGCTTCGGCGTGGTGGTGCCGCCCGCGGTGGCCGGCGCTCGGCAGGAGCTGCTGCTCGCCG
GCTCGCGGCCCGAGTTAGGGCGCTGGGAGCCGCACGGCGCCGTGCGTCTCAGGCCCGCGGGTACCGCGGC
GGGCGCCGCTGCGCTGGCGCTGCAGGAGCCCGGCCTGTGGCTCGCCGAGGTGGAGCTGGAGGCGTACGAG
GAGGCCGGCGGGGCGGAGCCGGGCCGCGTTGACACGTTCTGGTACAAGTTCCTGCAGCGCGAGCCTGGAG
GCGAGCTGCACTGGGAAGGAAATGGACCTCACCATGACCGTTGCTGCACATATAATGAGGACAACTTGGT
GGATGGTGTTTATTGTCTCCCAGTAGGACACTGGATTGAGGCCACTGGGCACACCAATGAAATGAAGCAC
ACAACAGACTTCTATTTTAATATTGCTGGCCACCAAGCCATGCACTATTCAAGAATTCTACCAAATATCT
GGCTGGGTAGCTGCCCTCGCCAACTGGAACATGTGACCATCAAACTGAAGCATGAACTGGGAGTTACAGC
TGTCATGAATTTCCAGACTGAATGGGATATCATCCAGAATTCTTCAGGCTGCAACCGCTACCCTGAACCC
ATGACTCCAGACACCATGATGAAGCTGTATAAGGAAGAAGGCTTGTCCTACATCTGGATGCCCACTCCAG
ACATGAGCACTGAGGGCCGAGTGCAGATGCTGCCACAGGCTGTGTGTCTCCTGCACGCGCTTCTGGAGAA
TGGACACACGGTGTATGTCCACTGCAACGCTGGCGTGGGTCGCTCCACAGCTGCAGTGTGCGGCTGGCTC
CACTATGTGATTGGCTGGAATCTGCGCAAGGTGCAGTACTTCATCATGGCCAAGAGGCCTGCGGTCTACA
TTGACGAGGACGCTTTGGCTCAAGCACAACAAGACTTTTCTCAGAAGTTCGGGAAGGTTCACTCTTCCAT
ATGCGCTTTGTAG

Translation (330 aa):
MLFRFGVVVPPAVAGARQELLLAGSRPELGRWEPHGAVRLRPAGTAAGAAALALQEPGLWLAEVELEAYE
EAGGAEPGRVDTFWYKFLQREPGGELHWEGNGPHHDRCCTYNEDNLVDGVYCLPVGHWIEATGHTNEMKH
TTDFYFNIAGHQAMHYSRILPNIWLGSCPRQLEHVTIKLKHELGVTAVMNFQTEWDIIQNSSGCNRYPEP
MTPDTMMKLYKEEGLSYIWMPTPDMSTEGRVQMLPQAVCLLHALLENGHTVYVHCNAGVGRSTAAVCGWL
HYVIGWNLRKVQYFIMAKRPAVYIDEDALAQAQQDFSQKFGKVHSSICAL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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