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Report for CCDS23564.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23564.1 Public Mus musculus 9 Scap 23 108 98 CCDS HistoryNCBI Gene:235623Re-query CCDS DB by CCDS ID:23564.1Re-query CCDS DB by GeneID:235623See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23564.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000098350.9 ENSMUSP00000095953.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000098350.9Link to Ensembl Protein Viewer:ENSMUSP00000095953.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000098350Re-query CCDS DB by Protein ID:ENSMUSP00000095953
Original member Current member NCBI NM_001001144.3 NP_001001144.2 Accepted alive Link to Nucleotide Sequence:NM_001001144.3Link to Protein Sequence:NP_001001144.2Re-query CCDS DB by Nucleotide ID:NM_001001144Re-query CCDS DB by Protein ID:NP_001001144Link to BLAST:NP_001001144.2
Original member Current member NCBI NM_001103162.2 NP_001096632.1 Accepted alive Link to Nucleotide Sequence:NM_001103162.2Link to Protein Sequence:NP_001096632.1Re-query CCDS DB by Nucleotide ID:NM_001103162Re-query CCDS DB by Protein ID:NP_001096632Link to BLAST:NP_001096632.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001001144.2 1276 Q6GQT6 1276 100% 0 0
NP_001096632.1 1276 Q6GQT6 1276 100% 0 0

Chromosomal Locations for CCDS 23564.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 110353043 110353164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110362394 110362523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110372197 110372354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110372976 110373196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110373390 110373495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110373997 110374169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110374510 110374636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110376563 110376675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110377639 110377733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110378344 110378442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110378569 110378787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110379456 110379832 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110380201 110380389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110380494 110380695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110380773 110380888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110380972 110381485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110381563 110381648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110383549 110383631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110383732 110383898 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110384066 110384146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110384267 110384473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110384556 110384801 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3831 nt):
ATGACCCTGACTGAAAGGCTTCGTGAGAAGATATCTCAGGCCTTCTACAACCATGGGCTGCTCTGCGCAT
CC
TATCCAATTCCCATCATCCTCTTCACAGGACTCTGCATCTTAGCCTGCTGCTACCCGCTGCTGAAGCT
C
CCCTTGCCTGGAACGGGACCTGTGGAATTCTCCACGCCTGTGAAGGGTTACTCGCCCCCGCCTGCGGAC
TCT
GACCACAAACAAGGAGAGCCCAGCGAGCAGCCAGAGTGGTATGTGGGTGCCCCCGTGGCGTACATCC
AA
CAGATATTTGTGAAGTCATCGGTGTCTCCCTGGCACAGAAATCTTCTGGCAGTCGATGTGTTCCGGTC
A
CCTCTGTCCCGAGCATTCCAACTGGTGGAAGAGATCCGGAACCATGTGCTGAGAGACAGCTCAGGGACC
AAG
AGCCTGGAGGAGGTTTGCCTGCAGGTGACAGACCTGCTGCCAGGCCTCAGGAAACTCCGGAGCCTAC
TT
CCCGAACATGGCTGCCTGCTGCTGTCCCCTGGGAACTTCTGGCAGAATGATTGGGAGAGATTCCATGC
C
GACCCTGACATCATTGGGACCATCCATCAACATGAGCCCAAAACTCTACAGACATCAGCCACACTCAAA
G
AC
TTGCTGTTTGGTGTTCCTGGGAAGTACAGTGGGGTGAGCCTCTACACAAGGAAAAGGATGGTCTCCT
AC
ACCATCACCCTGGTCTTCCAGCGCTACCATGCCAAGTTTCTGAGCAGCCTACGTGCCCGGCTCATGCT
G
CTGCACCCCAGCCCCAACTGCAGCCTCCGAGCAGAGAACCTGGTCCACGTCCACTTCAAAGAGGAGATT
GGC
ATTGCTGAGCTCATCCCGCTCGTGACCACCTACATCATCCTGTTTGCCTACATCTACTTCTCCACAC
GC
AAGATCGACATGGTCAAGTCCAAGTGGGGCCTCGCCCTGGCAGCCGTGGTCACAGTACTTAGCTCACT
G
CTCATGTCTGTGGGGCTCTGCACCCTCTTCGGCCTGACGCCCACACTCAATGGCGGTGAGATCTTCCCA
TAC
CTGGTGGTCGTTATTGGGCTAGAGAACGTGTTGGTGCTCACCAAGTCAGTGGTATCAACTCCAGTGG
AC
CTCGAGGTGAAGCTTCGGATTGCACAAGGCTTGAGTAGTGAGAGCTGGTCCATCATGAAGAACGCGGC
G
ACCGAGCTGGGCATCATCCTCATTGGCTACTTCACCCTCGTGCCTGCTATCCAGGAGTTCTGCCTCTTT
GCT
GTTGTGGGCCTGGTGTCTGACTTCTTCCTCCAGATGCTGTTCTTCACCACTGTCCTGTCGATCGACA
TT
CGCCGGATGGAGCTAGCAGACCTAAACAAGCGGCTGCCCCCTGAATCCTGCCTGCCCTCAGCCAAGCC
C
GTGGGGAGGCCAGCACGATATGAGAGACAGCAGGCTGTACGGCCATCCACGCCACACACCATCACATTG
CAA
CCATCTTCCTTCCGAAACCTGCGGCTTCCCAAAAGGCTGCGTGTCATCTACTTCCTGGCCCGCACTC
GC
CTGGCCCAGCGCCTCATCATGGCTGGTACCGTTGTCTGGATTGGCATCCTGGTATACACCGACCCGGC
A
GGGCTGCGCACCTACCTTGCTGCCCAGGTGACAGAGCAGAGCCCACTGGGTGAGGGTTCCCTGGGCCCC
ATG
CCTGTGCCTAGCGGAGTGCTGCCTGCCAGCCACCCGGACCCTGCATTCTCCATCTTCCCACCTGATG
CT
CCTAAACTGCCAGAGAACCAGACCTTGCCAGGTGAGCTGCCTGAGCATGCTGGTCCAGCAGAGGGTGT
C
CATGACAGCCGAGCCCCAGAGGTAACTTGGGGGCCTGAGGATGAGGAGCTGTGGAGGAAATTGTCCTTC
CGC
CACTGGCCCACACTCTTCAACTACTACAACATCACACTGGCCAAAAGGTACATCAGCCTGCTGCCTG
TC
ATCCCTGTCACACTACACCTGAATCCACGGGAGGCTCTGGAGGGGCGACACCCTCAGGATGGTCGCAG
T
GCCTGGGCCCCACAAGAGCCTTTGCCCGCTGGCCTCTGGGAGTCCGGACCTAAGGGACCAGGTGGAACA
CAG
ACCCATGGCGACATTACCTTGTACAAGGTGGCCGCGCTTGGCCTAGCAGCGGGCATCGTCCTGGTGC
TG
CTGCTGCTCTGCCTCTACCGGGTGCTCTGCCCGCGTAATTATGGGCAGCCGGGTGGTGGCCCCGGCAG
G
CGGAGGCGCGGGGAGCTGCCCTGCGATGACTACGGCTACGCACCGCCCGAGACGGAGATAGTGCCGCTG
GTG
CTGCGAGGTCACCTCATGGACATCGAGTGTCTGGCTAGCGATGGGATGCTACTAGTGAGCTGCTGCC
TG
GCAGGCCAAGTCTGCGTGTGGGACGCTCAGACAGGGGACTGCCTCACACGGATCCCACGCCCAGGGCC
A
CGCCGGGATAGCTGCGGAGGTGGAGCTTTTGAGACTCAGGAGAACTGGGAAAGGCTGTCAGATGGAGGC
AAG
GCTAGCCCGGAAGAACCTGGAGACAGCCCTCCGCTGCGACGACGCCCCCGAGGGCCTCCACCGCCTT
CC
CTCTTTGGGGACCAGCCCGACCTCACCTGCTTAATCGACACCAACTTCTCGGTGCAGCTGCCCCCAGA
G
CCCACTCAGCCCGAGCCTCGGCACCGGGTGGGCTGTGGCCGCTCTAGAGACTCGGGTTATGACTTCAGC
CGC
CTGGTGCAGCGTGTGTACCAGGAGGAAGGCCTGGCTGCTATGCGCATGCCGGCCCTGCGCCCACCCT
CC
CCTGGACCTCCCTTGCCCCAGGCCTCTCAAGAAGAGGGGACTGCACCTGAGAAGGGCTCCCCTCCCCT
G
GCCTGGACCCCCAGCACAGCCGGTTCCATCTGGAGCTTAGAGCTGCAAGGCAATCTCATCGTGGTTGGG
CGG
AGCAGCGGCCGGCTGGAGGTGTGGGACGCCATTGAGGGGGTGCTCTGCTGCAGCAATGAGGAGATCT
CC
TCAGGCATCACAGCCCTTGTCTTCTTGGACAGGAGGATTGTAGCTGCTCGGCTTAATGGTTCCCTTGA
T
TTCTTTTCTTTGGAGACCCACACTTCCCTCAGCCCCCTGCAGTTCAGAGGGACCCCAGGGCGAGGCAGT
TCT
CCTTCCTCATCTGTGTACAGCAGCAGCAACACAGTGACCTGTCATCGGACCCACACAGTGCCCTGTG
CA
CACCAGAAGCCCATCACAGCCCTGAGAGCTGCTGCCGGGCGCCTAGTGACAGGGAGCCAAGACCATAC
T
CTAAGAGTCTTCCGACTGGATGACTCGTGTTGCCTCTTTACCCTGAAGGGCCACTCAGGGGCAATCACA
GCT
GTGTACATTGATCAGACCATGGTACTGGCCAGTGGAGGACAAGATGGAGCCATCTGCCTGTGGGATG
TA
CTAACAGGCAGCCGGGTCAGCCAAACATTTGCTCACCGTGGAGATGTTACCTCCCTCACCTGTACCGC
T
TCCTGTGTCATTAGTAGTGGCCTGGATGACTTCATCAGTATCTGGGACCGCAGCACAGGCATCAAGCTG
TAC
TCCATTCAGCAGGACCTGGGCTGTGGTGCAAGCTTGGGTGTCATCTCAGATAACCTTCTGGTGACCG
GC
GGCCAGGGCTGTGTCTCCTTTTGGGACCTAAACTATGGGGACCTGTTACAGACAGTCTACTTGGGCAA
G
AACAGTGAAGCCCAGCCTGCCCGGCAGATTTTGGTGTTGGACAATGCTGCCATTGTCTGCAACTTTGGC
AGT
GAGCTCAGCCTAGTGTATGTGCCCTCTGTGCTGGAGAAACTGGACTGA


Translation (1276 aa):
MTLTERLREKISQAFYNHGLLCASYPIPIILFTGLCILACCYPLLKLPLPGTGPVEFSTPVKGYSPPPAD
S
DHKQGEPSEQPEW
YVGAPVAYIQQIFVKSSVSPWHRNLLAVDVFRSPLSRAFQLVEEIRNHVLRDSSGT
K
SLEEVCLQVTDLLPGLRKLRSLLPEHGCLLLSPGNFWQNDWERFHADPDIIGTIHQHEPKTLQTSATLK

D
LLFGVPGKYSGVSLYTRKRMVSYTITLVFQRYHAKFLSSLRARLMLLHPSPNCSLRAENLVHVHFKEEI
G
IAELIPLVTTYIILFAYIYFST
RKIDMVKSKWGLALAAVVTVLSSLLMSVGLCTLFGLTPTLNGGEIFP
Y
LVVVIGLENVLVLTKSVVSTPVDLEVKLRIAQ
GLSSESWSIMKNAATELGIILIGYFTLVPAIQEFCLF
A
VVGLVSDFFLQMLFFTTVLSIDIRRME
LADLNKRLPPESCLPSAKPVGRPARYERQQAVRPSTPHTITL
Q
PSSFRNLRLPKRLRVIYFLARTRLAQRLIM
AGTVVWIGILVYTDPAGLRTYLAAQVTEQSPLGEGSLGP
M
PVPSGVLPASHPDPAFSIFPPDAPKLPENQTLPGELPEHAGPAEGVHDSRAPEVTWGPEDEELWRKLSF
R
HWPTLFNYYNITLAK
RYISLLPVIPVTLHLNPREALEGRHPQDGRSAWAPQEPLPAGLWESGPKGPGGT
Q
THGDITLY
KVAALGLAAGIVLVLLLLCLYRVLCPRNYGQPGGGPGRRRRGELPCDDYGYAPPETEIVPL
V
LRGHLM
DIECLASDGMLLVSCCLAGQVCVWDAQTGDCLTRIPRPGPRRDSCGGGAFETQENWERLSDGG
K
ASPEEPGDSPPLRRRPRGPPPPSLFGDQPDLTCLIDTNFSVQLPPEPTQPEPRHRVGCGRSRDSGYDFS
R
LVQRVYQEEGLAAMRMPALRPPSPGPPLPQASQEEGTAPEKGSPPLAWTPSTAGSIWSLELQGNLIVVG
R
SSGRLE
VWDAIEGVLCCSNEEISSGITALVFLDRRIVAARLNGSLDFFSLETHTSLSPLQFRGTPGRGS
S
PSSSVYSSSNTVTCHRTHTVPCAHQKPITALRAAAGRLVTGSQDHTLR
VFRLDDSCCLFTLKGHSGAIT
A
VYIDQ
TMVLASGGQDGAICLWDVLTGSRVSQTFAHRGDVTSLTCTASCVISSGLDDFISIWDRSTGIKL
Y
SIQQ
DLGCGASLGVISDNLLVTGGQGCVSFWDLNYGDLLQTVYLGKNSEAQPARQILVLDNAAIVCNFG
S
ELSLVYVPSVLEKLD




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser