NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS23549.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23549.1 Public Mus musculus 9 Fbxw20 23 108 98 CCDS HistoryNCBI Gene:434440Re-query CCDS DB by CCDS ID:23549.1Re-query CCDS DB by GeneID:434440See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23549.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000079548.11 ENSMUSP00000078503.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000079548.11Link to Ensembl Protein Viewer:ENSMUSP00000078503.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000079548Re-query CCDS DB by Protein ID:ENSMUSP00000078503
Original member Current member NCBI NM_001008428.3 NP_001008428.1 Accepted alive Link to Nucleotide Sequence:NM_001008428.3Link to Protein Sequence:NP_001008428.1Re-query CCDS DB by Nucleotide ID:NM_001008428Re-query CCDS DB by Protein ID:NP_001008428Link to BLAST:NP_001008428.1

Chromosomal Locations for CCDS 23549.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 109217484 109217595 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 109221261 109221385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 109221669 109221847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 109223273 109223483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 109224356 109224514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 109225859 109226068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 109232269 109232387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 109233465 109233628 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 109233820 109233857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 109234613 109234702 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1407 nt):
ATGGAGGTCCATTTGCCTAGATTGCCATTGATGAAAATCTTCTCCTATCTGGATGCCTACAGTTTGCTAC
AGGCTGCCCAAGTGAACAAGAACTGGAATGAACTTGCAAGCAGTGATGTCCTGTGGAGGAAGTTGTGTCA
GAAGAGATGGCTCTTCTGTGACATGGTTACCCTACAGCTCCTGGGCACAGAGACATGGAAGCAGTTCTTC
GTTTTCCGAACATGGCAAGAACATGCCAAGACCCGGGCAAAGCCAGAAGATTTCACTTACAAGGAAATTC
CTGCGGAGTATGGATTTCGGGCAAATGCATGTTATATCTCAGGGTGTGGCTTAACAAGAAACGTACAAGA
CAGGTCGGTCATCTGTATGGTGAGTTCCATGACCAAGTTGTCCACCTGGGATATTCGTGAGGGCATTATG
ACCTGGGTAAGCACAGAACAGCCAGCCTATATCAAGCTGTTGACTACCCTCCCTGAGATGCACATTGCGG
TCACTGTAGATACACACTCAACTATCAAACTGTGGGACTGCCACAACAGGGAAGCTCTGGCAACTAACTG
CCTGTTCTCCTCCTGTAAATTACTGAAAGCTGTGTTTTCAAAGGATGACCCAATTGTCTTGGTAGGCGAT
ATCTCGGGAAACCTCTACATCTTTAGGATTCCTGACTTACACCTCATTTCCAAGGTGAATGTATTCCCAT
ACGGTATTGATGAACTCCACTGCTCTCCTCAGAAGAAATGGGTCTTTCTGATTATGAAACACCCACGTGT
CTTGACAAAGGTCGTTTACATGAACAGCTTACTGAGGACATCAGAATTCTCTGCCCCTGTGTCTACCATT
CTCAAATTTTCATTATGTGATAAAGCCTTCTGGACCCCAAGAAGGGAAGACAGGATAACCCAGATGTCCA
GAGGTGTCCCCCCAAGACCCACAAAATTTGCCACATTTGATATGAAGCTGGAAGAGATTGGGAACAAAGT
AACTGTTCAAGAATATTTGGTCGCAAGCTTCTCTTTGCAAGATTATGAGGCGAGTCCAGAATGGATGGGA
GTCAGTAATAAGGACGTGATTGTTTGTTCAACTGGATCCTCTCTCTTGCTCTTCAACATACATGGTCTCC
GTCTTCAGACATTTCACTACTGCCCAGAAGAGATCTTGAGACTATGGGTGGACCCCCTTCATGTCATCGT
CACCTGTAACGATGGCTCTATGGATGTGTATGCATGGGAGGAGAGAAGCCTGCTGCTCAGAAAGTGTTAT
CGGCTGCAAAACAGGAGAAATCTGCCACCAGAAAGCTTCATTTTCAAAACCCTATGTGACGATGTGAGCA
TAATTGGAGTGATGACAAATAGTCCCGCCCCCTGCTTTCTGATGGCATATACCTTGGCATCTGCTCTTGA
AAACTGA

Translation (468 aa):
MEVHLPRLPLMKIFSYLDAYSLLQAAQVNKNWNELASSDVLWRKLCQKRWLFCDMVTLQLLGTETWKQFF
VFRTWQEHAKTRAKPEDFTYKEIPAEYGFRANACYISGCGLTRNVQDRSVICMVSSMTKLSTWDIREGIM
TWVSTEQPAYIKLLTTLPEMHIAVTVDTHSTIKLWDCHNREALATNCLFSSCKLLKAVFSKDDPIVLVGD
ISGNLYIFRIPDLHLISKVNVFPYGIDELHCSPQKKWVFLIMKHPRVLTKVVYMNSLLRTSEFSAPVSTI
LKFSLCDKAFWTPRREDRITQMSRGVPPRPTKFATFDMKLEEIGNKVTVQEYLVASFSLQDYEASPEWMG
VSNKDVIVCSTGSSLLLFNIHGLRLQTFHYCPEEILRLWVDPLHVIVTCNDGSMDVYAWEERSLLLRKCY
RLQNRRNLPPESFIFKTLCDDVSIIGVMTNSPAPCFLMAYTLASALEN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH