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Report for CCDS23504.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23504.1 Public Mus musculus 9 Gnat1 23 108 98 CCDS HistoryNCBI Gene:14685Re-query CCDS DB by CCDS ID:23504.1Re-query CCDS DB by GeneID:14685See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23504.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000010205.8 ENSMUSP00000010205.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000010205.8Link to Ensembl Protein Viewer:ENSMUSP00000010205.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000010205Re-query CCDS DB by Protein ID:ENSMUSP00000010205
Original member Current member NCBI NM_008140.3 NP_032166.1 Accepted alive Link to Nucleotide Sequence:NM_008140.3Link to Protein Sequence:NP_032166.1Re-query CCDS DB by Nucleotide ID:NM_008140Re-query CCDS DB by Protein ID:NP_032166Link to BLAST:NP_032166.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032166.1 350 P20612 350 100% 0 0

Chromosomal Locations for CCDS 23504.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 107675888 107676078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107676196 107676349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107676543 107676672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107676893 107677021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107677129 107677286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107677374 107677515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107677631 107677673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107679443 107679548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1053 nt):
ATGGGGGCTGGGGCCAGCGCTGAGGAGAAGCACTCCAGAGAGCTGGAGAAGAAGCTGAAAGAGGATGCTG
AGAAGGATGCCCGCACTGTGAAACTGCTGCTTCTGGGTGCCGGTGAATCCGGGAAGAGCACTATTGTCAA
ACAGATGAAGATTATCCACCAGGACGGGTATTCGCTGGAGGAATGCCTCGAGTTCATTGCCATCATCTAC
GGCAACACTCTGCAGTCCATCCTGGCCATCGTTCGGGCTATGACCACGCTCAACATTCAGTATGGAGATT
CAGCCCGGCAGGATGATGCCCGGAAGCTCATGCACATGGCAGATACTATTGAGGAAGGCACAATGCCCAA
GGAGATGTCAGACATCATTCAGCGCTTGTGGAAGGACTCGGGTATCCAAGCTTGCTTTGACCGAGCCTCA
GAATACCAGCTCAATGACTCCGCCGGCTACTATCTCTCAGACCTAGAGCGTCTGGTGACTCCAGGATATG
TGCCCACTGAGCAGGACGTGTTGCGTTCTCGTGTCAAAACCACTGGTATTATCGAGACTCAATTCTCCTT
CAAGGACCTCAACTTCAGAATGTTCGATGTGGGCGGGCAGCGTTCCGAGCGCAAAAAGTGGATCCACTGC
TTTGAGGGTGTGACGTGCATCATTTTCATCGCTGCGCTGAGCGCTTACGACATGGTGCTGGTGGAGGACG
ACGAAGTGAACCGAATGCACGAGAGCCTGCACCTGTTCAACAGCATCTGCAATCATCGCTACTTCGCCAC
AACGTCTATCGTGCTCTTCCTCAACAAGAAGGACGTTTTCTCCGAGAAGATAAAAAAGGCACACCTCAGC
ATCTGCTTCCCCGACTACGATGGACCTAACACTTACGAGGATGCCGGCAACTACATCAAAGTGCAGTTCC
TGGAGCTTAACATGCGACGTGATGTGAAGGAGATCTATTCCCACATGACGTGCGCTACCGACACACAGAA
CGTCAAGTTTGTCTTTGACGCTGTCACCGACATTATCATCAAGGAGAACCTCAAAGACTGCGGGCTCTTC
TGA

Translation (350 aa):
MGAGASAEEKHSRELEKKLKEDAEKDARTVKLLLLGAGESGKSTIVKQMKIIHQDGYSLEECLEFIAIIY
GNTLQSILAIVRAMTTLNIQYGDSARQDDARKLMHMADTIEEGTMPKEMSDIIQRLWKDSGIQACFDRAS
EYQLNDSAGYYLSDLERLVTPGYVPTEQDVLRSRVKTTGIIETQFSFKDLNFRMFDVGGQRSERKKWIHC
FEGVTCIIFIAALSAYDMVLVEDDEVNRMHESLHLFNSICNHRYFATTSIVLFLNKKDVFSEKIKKAHLS
ICFPDYDGPNTYEDAGNYIKVQFLELNMRRDVKEIYSHMTCATDTQNVKFVFDAVTDIIIKENLKDCGLF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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