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Report for CCDS23487.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23487.1 Public Mus musculus 9 Mapkapk3 23 108 98 CCDS HistoryNCBI Gene:102626Re-query CCDS DB by CCDS ID:23487.1Re-query CCDS DB by GeneID:102626See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23487.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000035194.7 ENSMUSP00000035194.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000035194.7Link to Ensembl Protein Viewer:ENSMUSP00000035194.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000035194Re-query CCDS DB by Protein ID:ENSMUSP00000035194
Original member NCBI NM_178907.3 NP_849238.1 Updated not alive Link to Nucleotide Sequence:NM_178907.3Link to Protein Sequence:NP_849238.1Re-query CCDS DB by Nucleotide ID:NM_178907Re-query CCDS DB by Protein ID:NP_849238
Current member NCBI NM_178907.4 NP_849238.1 Accepted alive Link to Nucleotide Sequence:NM_178907.4Link to Protein Sequence:NP_849238.1Re-query CCDS DB by Nucleotide ID:NM_178907Re-query CCDS DB by Protein ID:NP_849238Link to BLAST:NP_849238.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_849238.1 384 Q3UMW7-1 384 100% 0 0

Chromosomal Locations for CCDS 23487.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 107256183 107256335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107257062 107257142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107257415 107257500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107258330 107258454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107258814 107258889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107260045 107260168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107261878 107261957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107262423 107262487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107263625 107263764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107289120 107289344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1155 nt):
ATGGATGGCGAGACAGCAGGGGAGAAGGGGAGTCTTGTGCCCCCGCCAGGTGCGCTCGGCGGGTCCGCCT
TGGGTGGTGCTCCGGCCCCAGGTGTGCGACGGGAACCCAAGAAGTACGCGGTGACTGATGACTACCAGTT
GTCCAAGCAAGTGCTGGGTCTGGGTGTGAACGGCAAGGTACTGGAGTGCTACCATCGGCGCTCTGGCCAG
AAGTGTGCCCTGAAGCTCCTGTATGACAGCCCCAAGGCCCGGCAGGAGGTGGACCACCACTGGCAGGCGT
CAGGCGGCCCCCACATCGTGCGCATCCTGGACGTGTATGAGAATATGCACCACGGCAAGCGCTGTCTCCT
CATTGTCATGGAATGCATGGAGGGTGGTGAGCTGTTCAGCAGGATTCAGGAGCGTGGTGACCAGGCTTTC
ACTGAGAGAGAGGCTGCAGAGATAATGCGGGACATTGGCACTGCCATCCAGTTCTTGCACAGCCGGAACA
TTGCCCACCGAGATGTCAAGCCTGAAAACCTACTCTATACATCCAAGGAGAAGGATGCTGTACTTAAACT
CACCGATTTTGGCTTTGCCAAGGAAACCACCCAAAATGCCCTCCAGACACCCTGCTACACTCCCTATTAT
GTGGCTCCTGAGGTCCTGGGTCCAGAGAAGTATGACAAGTCCTGTGATATGTGGTCCCTGGGCGTCATCA
TGTACATCCTTTTGTGTGGATTCCCACCCTTCTACTCCAACACCGGCCAGGCCATCTCTCCAGGAATGAA
AAGAAGGATTCGCTTGGGCCAGTATAGCTTCCCTAACCCTGAATGGTTAGATGTCTCTGAGGATGCCAAG
CAGCTAATCCGCCTGCTCCTGAAGACAGATCCCACAGAGAGGCTAACGATCATGCAGTTTATGAACCATC
CTTGGATCAATCAATCCATGGTGGTCCCACAGACCCCACTCTACACAGCCCGAGTGCTCCAGGAAGACAA
AGATCACTGGGATGACGTCAAGGAAGAGATGACCAGTGCCCTGGCCACTATGCGGGTAGACTATGACCAG
GTGAAGATCAAGGACCTGAAGACCTCTAACAACCGGCTCCTCAACAAGAGGAGGAAAAAGCAGGCAGGCA
GCTCCTCAGCCTCACAAGGATGCAACAACCAGTAA

Translation (384 aa):
MDGETAGEKGSLVPPPGALGGSALGGAPAPGVRREPKKYAVTDDYQLSKQVLGLGVNGKVLECYHRRSGQ
KCALKLLYDSPKARQEVDHHWQASGGPHIVRILDVYENMHHGKRCLLIVMECMEGGELFSRIQERGDQAF
TEREAAEIMRDIGTAIQFLHSRNIAHRDVKPENLLYTSKEKDAVLKLTDFGFAKETTQNALQTPCYTPYY
VAPEVLGPEKYDKSCDMWSLGVIMYILLCGFPPFYSNTGQAISPGMKRRIRLGQYSFPNPEWLDVSEDAK
QLIRLLLKTDPTERLTIMQFMNHPWINQSMVVPQTPLYTARVLQEDKDHWDDVKEEMTSALATMRVDYDQ
VKIKDLKTSNNRLLNKRRKKQAGSSSASQGCNNQ


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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