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Report for CCDS23461.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23461.1 Public Mus musculus 9 Cpne4 23 108 98 CCDS HistoryNCBI Gene:74020Re-query CCDS DB by CCDS ID:23461.1Re-query CCDS DB by GeneID:74020See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23461.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000057742.14 ENSMUSP00000049663.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000057742.14Link to Ensembl Protein Viewer:ENSMUSP00000049663.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000057742Re-query CCDS DB by Protein ID:ENSMUSP00000049663
Original member NCBI NM_028719.2 NP_082995.1 Updated not alive Link to Nucleotide Sequence:NM_028719.2Link to Protein Sequence:NP_082995.1Re-query CCDS DB by Nucleotide ID:NM_028719Re-query CCDS DB by Protein ID:NP_082995
Current member NCBI NM_028719.3 NP_082995.1 Accepted alive Link to Nucleotide Sequence:NM_028719.3Link to Protein Sequence:NP_082995.1Re-query CCDS DB by Nucleotide ID:NM_028719Re-query CCDS DB by Protein ID:NP_082995Link to BLAST:NP_082995.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082995.1 557 Q8BLR2 557 100% 0 0

Chromosomal Locations for CCDS 23461.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 104686426 104686605 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 104872679 104872858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 104900218 104900289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 104901444 104901518 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 104922493 104922576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 104925750 104925839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 104989572 104989670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 104993128 104993214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 104993828 104993887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 105007534 105007667 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 105018475 105018529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 105019766 105019817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 105022288 105022421 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 105026703 105026939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 105032745 105032879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1674 nt):
ATGAAGAAGATGAGCAACATTTATGAGTCGGCTGCCAACACGCTGGGAATCTTTAACAGCCCCTGCCTGA
CCAAAGTCGAGCTGCGTGTGGCATGCAAAGGCATTTCCGACAGAGATGCCCTGTCCAAGCCGGACCCTTG
TGTCATCCTCAAGATGCAATCCCACGGGCAATGGTTTGAGGTGGACAGGACGGAGGTGATTCGTACCTGC
ATAAACCCAGTGTACTCAAAGCTGTTTACAGTGGACTTTTATTTTGAAGAGGTCCAACGTCTCCGGTTTG
AAGTTCATGACATCAGCAGCAACCACAATGGACTGAAGGAAGCTGACTTCCTTGGTGGCATGGAGTGCAC
ACTTGGCCAGATTGTCTCACAGAGAAAGCTCTCCAAGTCCTTGCTGAAGCATGGGAACACAGCGGGGAAA
TCCTCCATCACGGTGATTGCTGAAGAATTATCGGGCAATGACGACTATGTTGAGCTTGCATTCAATGCAC
GGAAATTGGATGATAAGGATTTCTTCAGTAAATCAGACCCATTTCTGGAAATTTTCAGAATGAACGATGA
CGCGACTCAACAGCTTGTGCATCGAACAGAGGTTGTGATGAATAACTTAAGCCCAGCCTGGAAGTCATTC
AAAGTATCGGTAAACTCTCTATGCAGTGGAGATCCAGACCGCAGGCTGAAGTGCATAGTGTGGGACTGGG
ACTCCAACGGCAAGCATGACTTCATCGGAGAGTTCACCTCCACCTTCAAGGAGATGAGAGGAGCCATGGA
AGGGAAACAGGTACAGTGGGAATGCATCAACCCCAAGTACAAAGCCAAGAAGAAAAATTACAAGAACTCA
GGCATGGTGATTCTAAACCAGTGCAAGATCCACAAGATGCATTCCTTCTTGGACTACATCATGGGCGGCT
GTCAAATCCAGTTTACAGTAGCTATAGACTTCACTGCCTCTAATGGGGACCCCAGAAACAGCTGTTCCCT
GCACTATATCCACCCTTACCAGCCCAATGAGTACCTAAAGGCCTTGGTGGCTGTGGGAGAGATTTGCCAA
GACTATGACAGTGACAAAATGTTCCCGGCTTTTGGGTTTGGCGCCAGGATACCCCCGGAATACACGGTCT
CTCATGACTTTGCAATCAACTTTAATGAAGACAACCCGGAGTGTGCAGGAATTCAAGGAGTCGTGGAAGC
CTATCAGAGCTGTCTTCCCAAGCTCCAGCTTTATGGTCCCACCAACATCGCTCCCATCATTCAGAAGGTT
GCCAAGTCAGCCTCGGAGGAGACAAACACCAAGGAAGCATCGCAATACTTCATCCTGCTGATCCTGACAG
ACGGGGTCATCACAGACATGGCTGACACCCGGGAGGCCATCGTCCACGCCTCCCACCTCCCCATGTCAGT
CATCATCGTTGGGGTGGGGAACGCCGACTTCAGTGACATGCAGATGCTGGACGGTGACGACGGAATTCTA
AGGTCACCCAAGGGAGAACCTGTCCTTCGAGACATCGTCCAGTTTGTGCCCTTCCGGAACTTCAAACATG
CATCGCCAGCTGCCCTTGCCAAGAGTGTGTTGGCTGAAGTCCCAAATCAAGTCGTAGACTATTACAATGG
TAAAGGGATTAAACCAAAGTGCTCATCGGAAGTATATGAATCGTCCCGGACACTGGCACCGTGA

Translation (557 aa):
MKKMSNIYESAANTLGIFNSPCLTKVELRVACKGISDRDALSKPDPCVILKMQSHGQWFEVDRTEVIRTC
INPVYSKLFTVDFYFEEVQRLRFEVHDISSNHNGLKEADFLGGMECTLGQIVSQRKLSKSLLKHGNTAGK
SSITVIAEELSGNDDYVELAFNARKLDDKDFFSKSDPFLEIFRMNDDATQQLVHRTEVVMNNLSPAWKSF
KVSVNSLCSGDPDRRLKCIVWDWDSNGKHDFIGEFTSTFKEMRGAMEGKQVQWECINPKYKAKKKNYKNS
GMVILNQCKIHKMHSFLDYIMGGCQIQFTVAIDFTASNGDPRNSCSLHYIHPYQPNEYLKALVAVGEICQ
DYDSDKMFPAFGFGARIPPEYTVSHDFAINFNEDNPECAGIQGVVEAYQSCLPKLQLYGPTNIAPIIQKV
AKSASEETNTKEASQYFILLILTDGVITDMADTREAIVHASHLPMSVIIVGVGNADFSDMQMLDGDDGIL
RSPKGEPVLRDIVQFVPFRNFKHASPAALAKSVLAEVPNQVVDYYNGKGIKPKCSSEVYESSRTLAP


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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