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Report for CCDS23435.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23435.1 Public Mus musculus 9 Dbr1 23 108 98 CCDS HistoryNCBI Gene:83703Re-query CCDS DB by CCDS ID:23435.1Re-query CCDS DB by GeneID:83703See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23435.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000066650.11 ENSMUSP00000070991.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000066650.11Link to Ensembl Protein Viewer:ENSMUSP00000070991.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000066650Re-query CCDS DB by Protein ID:ENSMUSP00000070991
Original member Current member NCBI NM_031403.3 NP_113580.2 Accepted alive Link to Nucleotide Sequence:NM_031403.3Link to Protein Sequence:NP_113580.2Re-query CCDS DB by Nucleotide ID:NM_031403Re-query CCDS DB by Protein ID:NP_113580Link to BLAST:NP_113580.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_113580.2 550 Q923B1 550 100% 0 0

Chromosomal Locations for CCDS 23435.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 99575929 99576125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 99576576 99576700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 99578441 99578521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 99579357 99579442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 99580139 99580363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 99582022 99582102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 99582317 99582462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 99583312 99584023 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1653 nt):
ATGAGGGTGGCCGTGGCCGGCTGCTGCCACGGCGAGCTGGACAAGATCTACGAGACTCTGGCGCTGGCGG
AGCGGCGCGGCTCGGGACCCGTGGATCTCCTTCTGTGCTGCGGCGACTTCCAGGCGGTGCGCAACGAGGC
CGACCTGCGCTGCATGGCCGTGCCGCCCAAGTACCGTCACATGCAGACCTTCTACAGATATTACTCTGGA
GAGAAAAAGGCCCCGGTTCTCACCATCTTCATTGGAGGAAACCATGAAGCCTCAAACCATTTGCAAGAGT
TACCCTATGGTGGCTGGGTAGCGCCGAATATTTATTATTTAGGCTTGGCTGGTGTTGTCAAATACCGAGG
AGTAAGGATTGGTGGCATCTCTGGCATATTTAAATCTCATGATTATAGAAAAGGTCATTTTGAGTGCCCC
CCTTATAATTCATCTACCATAAGGAGTATATATCATGTGAGAAATATAGAGGTCTACAAATTAAAACAGT
TAAAGCAGCCTGTACATATATTCTTGTCTCATGATTGGCCAAGAAATATATATCATTATGGCAATAAGAA
GCAGCTTCTTAAGACCAAATCTTTTTTCCGCCAAGAAGTGGAAAACAGCACCCTGGGGAGCCCCGCTGCC
TCGGAGCTGCTGGAGCACCTACAGCCTGCGTACTGGTTCTCCGCGCACCTGCATGTCAAGTTCGCAGCCC
TGATGCAGCATCAGGCCACAGATAAAGACCAAGCAGGCAAAGAAACCAAGTTTTTAGCCTTGGACAAGTG
CTTGCCACACAGAGACTTCCTTCAGGTGTTAGAGATAGAACATGACCCCAGTGCTCCTGAGTACTTAGAG
TATGACGTTGAATGGCTTACTGTTCTCAGGGCCACTGATGACCTGATTAATGTGACTGGGGGCCTGTGGA
ATATGCCTGAAGACAACGGTCTGCACACAAGGTGGGATTATAGTGCAACGGAAGAAACTATGAAGGAAGT
AATGGAAAAATTGAACCATGACCCTAAAGTCCCCTGTAACTTCACCATGACAGCTGCTTGTTATGATCCC
AGTAAGCCCCAGACACAAGTGAAGCTGGTTCACAGGATCAATCCACAGACGACTGAGTTCTGTGCCCAGC
TTGGCATCACAGACATCAATGTCATGATTCAGAAGGCCAGAGAGGAAGAGCACCATCAGTGTGGTGAATA
TGAGCAGCAGGGTGACCCGGGGACTGAGGAGTCTGAAGAGGACCGGAGTGAGTACAACACAGACACGTCG
GCCCTCTCCTCCATTAATCCAGATGAAATCATGCTGGATGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGCTGTAAGCGCTCACAGTGACATGAACACACCTTCTGTGGAACCTGCTTCTGACCAGGCTTCTGACCT
CTCTACAAGCTTTTCTGACATCAGGAACTTACCAAGTTCCATGTTTGTGTCCTCTGACGATGCATCCCGT
TCTCCAGCAAGTGGAGAGGGGAAATGTGGTGAAACGGTGGAGTCTGGGGATGAAAAAGACTTGGCTAAGT
TTCCTCTGAAGCGGCTGAGTGATGAACACGAACCTGAACAAAGGAAGAAAATAAAGAGGAGGAACCAAGC
CATCTACGCTGCAGTGGATGATGGGGATGCTAGTGCCGAGTGA

Translation (550 aa):
MRVAVAGCCHGELDKIYETLALAERRGSGPVDLLLCCGDFQAVRNEADLRCMAVPPKYRHMQTFYRYYSG
EKKAPVLTIFIGGNHEASNHLQELPYGGWVAPNIYYLGLAGVVKYRGVRIGGISGIFKSHDYRKGHFECP
PYNSSTIRSIYHVRNIEVYKLKQLKQPVHIFLSHDWPRNIYHYGNKKQLLKTKSFFRQEVENSTLGSPAA
SELLEHLQPAYWFSAHLHVKFAALMQHQATDKDQAGKETKFLALDKCLPHRDFLQVLEIEHDPSAPEYLE
YDVEWLTVLRATDDLINVTGGLWNMPEDNGLHTRWDYSATEETMKEVMEKLNHDPKVPCNFTMTAACYDP
SKPQTQVKLVHRINPQTTEFCAQLGITDINVMIQKAREEEHHQCGEYEQQGDPGTEESEEDRSEYNTDTS
ALSSINPDEIMLDEEEEEEEEEEEAVSAHSDMNTPSVEPASDQASDLSTSFSDIRNLPSSMFVSSDDASR
SPASGEGKCGETVESGDEKDLAKFPLKRLSDEHEPEQRKKIKRRNQAIYAAVDDGDASAE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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