NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS23414.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23414.1 Public Mus musculus 9 Atp1b3 23 108 98 CCDS HistoryNCBI Gene:11933Re-query CCDS DB by CCDS ID:23414.1Re-query CCDS DB by GeneID:11933See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23414.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034983.6 ENSMUSP00000034983.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034983.6Link to Ensembl Protein Viewer:ENSMUSP00000034983.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000034983Re-query CCDS DB by Protein ID:ENSMUSP00000034983
Original member NCBI NM_007502.5 NP_031528.1 Updated not alive Link to Nucleotide Sequence:NM_007502.5Link to Protein Sequence:NP_031528.1Re-query CCDS DB by Nucleotide ID:NM_007502Re-query CCDS DB by Protein ID:NP_031528
Current member NCBI NM_007502.6 NP_031528.1 Accepted alive Link to Nucleotide Sequence:NM_007502.6Link to Protein Sequence:NP_031528.1Re-query CCDS DB by Nucleotide ID:NM_007502Re-query CCDS DB by Protein ID:NP_031528Link to BLAST:NP_031528.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031528.1 278 P97370 278 100% 0 0

Chromosomal Locations for CCDS 23414.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 96333524 96333694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 96335379 96335462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 96338659 96338709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 96340202 96340386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 96343268 96343375 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 96345765 96345893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 96364046 96364154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (837 nt):
ATGACGAAGACTGAGAAGAAATCCTTCCACCAGAGCCTGGCCGAGTGGAAGCTGTTCATCTACAACCCGA
GCAGCGGAGAGTTTCTGGGGCGCACCTCCAAGAGCTGGGGTCTGATCTTGCTCTTCTACCTAGTTTTTTA
TGGGTTCTTGGCTGCACTCTTCACATTCACAATGTGGGCCATGCTCCAGACTCTGAATGATGAAGTTCCG
AAATATCGAGACCAGATTCCTAGTCCAGGACTTATGGTTTTTCCCAAACCGCAGACTGCCTTGGAATATA
CATTCAGCATGTCTGAGCCACAGACTTACAAAAAGTTGGTTGAAGACCTGGAGAGTTTCCTAAAGCCATA
TTCTGTGGAAGAACAGAAGAACCTCACAAGTTGTCCTGATGGAGCGCCTTTTATTCAGCATGGTCCTGAC
TATAGGGCATGTCAGTTTCCAGTCTCCTTGCTTGAAGAATGTAGTGGTGTGACTGATGCTAATTTTGGCT
ATTCCAAAGGACAGCCTTGCATCCTTGTGAAAATGAACAGAATAATCGATTTAATCCCAGACGGATATCC
ACAAATATCGTGTTTGCCAAAGGAAGAAAACGCAACTATAGCAACTTATCCTGAATTTGGAGTTTTAGAC
TTAAAGTATTTTCCATATTATGGGAAAAAACGGCATGTTGGATATCGACAGCCCCTAGTTGCCGTACAGG
TCAAATTTGACTCTGGTCTTAACAAGAAAGAAGTAACAGTTGAGTGCCATATTGCTGGAACCAGGAACCT
AAAAAACAAGAATGAGCGTGACAAGTTCTTGGGACGTGTTTCGTTCAAAGTCACAGCACGAGCCTAG

Translation (278 aa):
MTKTEKKSFHQSLAEWKLFIYNPSSGEFLGRTSKSWGLILLFYLVFYGFLAALFTFTMWAMLQTLNDEVP
KYRDQIPSPGLMVFPKPQTALEYTFSMSEPQTYKKLVEDLESFLKPYSVEEQKNLTSCPDGAPFIQHGPD
YRACQFPVSLLEECSGVTDANFGYSKGQPCILVKMNRIIDLIPDGYPQISCLPKEENATIATYPEFGVLD
LKYFPYYGKKRHVGYRQPLVAVQVKFDSGLNKKEVTVECHIAGTRNLKNKNERDKFLGRVSFKVTARA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH