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Report for CCDS23372.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23372.1 Public Mus musculus 9 Irak1bp1 23 108 98 CCDS HistoryNCBI Gene:65099Re-query CCDS DB by CCDS ID:23372.1Re-query CCDS DB by GeneID:65099See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 23372.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000113245.8 ENSMUSP00000108871.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113245.8Link to Ensembl Protein Viewer:ENSMUSP00000108871.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000113245Re-query CCDS DB by Protein ID:ENSMUSP00000108871
Original member Current member NCBI NM_022986.4 NP_075362.3 Accepted alive Link to Nucleotide Sequence:NM_022986.4Link to Protein Sequence:NP_075362.3Re-query CCDS DB by Nucleotide ID:NM_022986Re-query CCDS DB by Protein ID:NP_075362Link to BLAST:NP_075362.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_075362.3 259 Q9ESJ7 259 100% 0 0

Chromosomal Locations for CCDS 23372.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 82830028 82830339 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 82837418 82837483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 82846299 82846429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 82846527 82846797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (780 nt):
ATGTCGCTGCAACCCGCCCCTGCATCGCGGGTGTTCATGGAACTGGTTCCCTGGGCTGACCGGGGCCGGG
AAAACCATCCGATCTCGGCCGCGGAGGCGCAGCCGATCGGCCGCCGACCCCACGTCGCGGAGGCCCACCC
CGGAGCCCGTGAGGTCCACGTGAGCGGCGCGGCCGAGGTGTCCGCCAGCCCCGACCGAGCGCTGGTGACC
GTGCGAGTGAGCAGCACCAAGGAGGTGTCGGCCGAGGCCAAGAAGAGTGTGTGTCGCCGCCTGGACTACA
TCACGCAGAGCCTCCAGCAGCAGGGGTTTCAGGCAGAAAATGTAACTGTGACAAAGAACATTAGAAGAGT
AGAAAATGCGTATCACATGGAAGCCGAGGTCTGCATTACATTTACTGAATTTGGAAAAATGCAAAATATT
TGTAACTTTCTGGTTGAAAAACTAGATAGCTCTGTTGTCATCAGCCCACCTGAGTTCTATCACACACCAG
GTTCTGTTGAGAATCTTCGGCGGCAGGCCTGTCTGGTTGCTGTTGAGAATGCATGGCGCAAAGCTCAGGA
AGTCTGTGACCTCGTTGGCCAAACTCTGGGAAAACCTTTACTAATCAAAGAAGAAGAAACAAAAGACTGG
GAAGGCCAAACGGATGATCATCAGTTATCCAGACTGCCAGGCACATTAACTGTACAACAGAAAATCAAAA
GTGCAACCATCCATGCAGCTTCGAAGGTGTTCATTACTTTTGAGGTAAAAGGAAAAGAGAAGAAAAAAAA
GCATCTTTAA

Translation (259 aa):
MSLQPAPASRVFMELVPWADRGRENHPISAAEAQPIGRRPHVAEAHPGAREVHVSGAAEVSASPDRALVT
VRVSSTKEVSAEAKKSVCRRLDYITQSLQQQGFQAENVTVTKNIRRVENAYHMEAEVCITFTEFGKMQNI
CNFLVEKLDSSVVISPPEFYHTPGSVENLRRQACLVAVENAWRKAQEVCDLVGQTLGKPLLIKEEETKDW
EGQTDDHQLSRLPGTLTVQQKIKSATIHAASKVFITFEVKGKEKKKKHL


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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