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Report for CCDS23350.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23350.1 Public Mus musculus 9 Hcrtr2 23 108 98 CCDS HistoryNCBI Gene:387285Re-query CCDS DB by CCDS ID:23350.1Re-query CCDS DB by GeneID:387285See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23350.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000063140.14 ENSMUSP00000058230.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000063140.14Link to Ensembl Protein Viewer:ENSMUSP00000058230.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000063140Re-query CCDS DB by Protein ID:ENSMUSP00000058230
Original member Current member NCBI NM_198962.4 NP_945200.1 Accepted alive Link to Nucleotide Sequence:NM_198962.4Link to Protein Sequence:NP_945200.1Re-query CCDS DB by Nucleotide ID:NM_198962Re-query CCDS DB by Protein ID:NP_945200Link to BLAST:NP_945200.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_945200.1 460 P58308-1 460 100% 0 0

Chromosomal Locations for CCDS 23350.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 76228151 76228205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 76230504 76230726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 76232900 76233021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 76236169 76236389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 76246347 76246462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 76254461 76254704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 76259652 76259830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 76323282 76323504 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1383 nt):
ATGTCCAGCACCAAACTGGAGGATTCCCTCTCTCGTCGCAACTGGTCATCTGCTTCAGAGCTGAATGAAA
CTCAAGAGCCGTTTTTAAATCCCACGGACTATGACGACGAGGAATTCCTGCGGTACCTGTGGAGGGAATA
CCTACACCCGAAAGAATATGAGTGGGTCCTGATCGCAGGGTATATCATCGTGTTCGTTGTGGCTCTCATC
GGGAACGTCCTGGTCTGTGTGGCAGTGTGGAAGAACCACCACATGAGGACAGTCACCAACTACTTCATAG
TCAACCTTTCCCTAGCAGATGTGCTTGTGACCATCACCTGCCTTCCAGCTACCCTCGTTGTTGACATCAC
TGAGACTTGGTTCTTTGGACAGTCCCTCTGTAAGGTCATTCCTTATTTACAGACTGTGTCAGTGTCTGTG
TCTGTTCTTACGTTGAGCTGCATTGCCTTGGACCGATGGTACGCCATTTGTCACCCTTTGATGTTCAAGA
GCACAGCCAAACGGGCTCGAAACAGCATCGTTGTCATCTGGATCGTCTCCTGCATCATAATGATTCCTCA
AGCCATTGTCATGGAGTGCAGCAGCATGCTCCCTGGCCTAGCCAATAAGACCACCCTCTTTACAGTATGT
GATGAACACTGGGGCGGTGAAGTTTACCCAAAGATGTACCATATCTGCTTCTTTCTGGTGACATACATGG
CACCTCTGTGTCTTATGATATTGGCTTATCTCCAAATATTCCGTAAACTCTGGTGCCGACAGATTCCCGG
AACTTCTTCTGTGGTTCAGAGAAAATGGAAGCAGCAGCAGCCGGTTTCTCAGCCCCGGGGGTCCGGACAG
CAGAGCAAGGCTCGGATTAGCGCTGTTGCTGCTGAGATAAAGCAGATCCGAGCACGAAGGAAAACAGCCC
GGATGCTCATGGTTGTACTTCTGGTCTTTGCAATTTGCTATCTACCAATCAGCATCCTCAATGTGCTAAA
GAGAGTATTTGGGATGTTCACACACACGGAAGACAGAGAGACTGTCTATGCTTGGTTCACTTTTTCTCAT
TGGCTTGTATATGCCAACAGTGCTGCAAACCCAATTATTTATAATTTTCTTAGTGGAAAATTTCGAGAGG
AATTTAAAGCTGCCTTTTCTTGTTGTCTTGGGGTTCATCATCGCCAAGGAGACCGCCTCGCCAGGGGACG
CACGAGCACAGAGAGCAGGAAGTCCCTGACCACACAGATCAGCAACTTTGACAATGTATCAAAACTCTCA
GAGCACGTGGTGCTCACCAGCATAAGCACACTCCCAGCAGCCAACGGGGCAGGACCGCTTCAAAACTGGT
ATCTACAGCAGGGAGTACCATCTTCACTCCTGTCCACCTGGCTGGAGGTCTGA

Translation (460 aa):
MSSTKLEDSLSRRNWSSASELNETQEPFLNPTDYDDEEFLRYLWREYLHPKEYEWVLIAGYIIVFVVALI
GNVLVCVAVWKNHHMRTVTNYFIVNLSLADVLVTITCLPATLVVDITETWFFGQSLCKVIPYLQTVSVSV
SVLTLSCIALDRWYAICHPLMFKSTAKRARNSIVVIWIVSCIIMIPQAIVMECSSMLPGLANKTTLFTVC
DEHWGGEVYPKMYHICFFLVTYMAPLCLMILAYLQIFRKLWCRQIPGTSSVVQRKWKQQQPVSQPRGSGQ
QSKARISAVAAEIKQIRARRKTARMLMVVLLVFAICYLPISILNVLKRVFGMFTHTEDRETVYAWFTFSH
WLVYANSAANPIIYNFLSGKFREEFKAAFSCCLGVHHRQGDRLARGRTSTESRKSLTTQISNFDNVSKLS
EHVVLTSISTLPAANGAGPLQNWYLQQGVPSSLLSTWLEV


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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