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Report for CCDS23340.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23340.1 Public Mus musculus 9 Arpp19 23 108 98 CCDS HistoryNCBI Gene:59046Re-query CCDS DB by CCDS ID:23340.1Re-query CCDS DB by GeneID:59046See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23340.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000007800.7 ENSMUSP00000007800.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000007800.7Link to Ensembl Protein Viewer:ENSMUSP00000007800.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000007800Re-query CCDS DB by Protein ID:ENSMUSP00000007800
Original member Current member EBI ENSMUST00000168166.7 ENSMUSP00000126618.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000168166.7Link to Ensembl Protein Viewer:ENSMUSP00000126618.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000168166Re-query CCDS DB by Protein ID:ENSMUSP00000126618
Original member Current member EBI ENSMUST00000164467.7 ENSMUSP00000130730.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000164467.7Link to Ensembl Protein Viewer:ENSMUSP00000130730.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000164467Re-query CCDS DB by Protein ID:ENSMUSP00000130730
Original member Current member EBI ENSMUST00000170308.7 ENSMUSP00000132350.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000170308.7Link to Ensembl Protein Viewer:ENSMUSP00000132350.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000170308Re-query CCDS DB by Protein ID:ENSMUSP00000132350
Original member Current member NCBI NM_001357878.1 NP_001344807.1 Accepted alive Link to Nucleotide Sequence:NM_001357878.1Link to Protein Sequence:NP_001344807.1Re-query CCDS DB by Nucleotide ID:NM_001357878Re-query CCDS DB by Protein ID:NP_001344807Link to BLAST:NP_001344807.1
Original member Current member NCBI NM_001357879.1 NP_001344808.1 Accepted alive Link to Nucleotide Sequence:NM_001357879.1Link to Protein Sequence:NP_001344808.1Re-query CCDS DB by Nucleotide ID:NM_001357879Re-query CCDS DB by Protein ID:NP_001344808Link to BLAST:NP_001344808.1
Original member Current member NCBI NM_021548.4 NP_067523.1 Accepted alive Link to Nucleotide Sequence:NM_021548.4Link to Protein Sequence:NP_067523.1Re-query CCDS DB by Nucleotide ID:NM_021548Re-query CCDS DB by Protein ID:NP_067523Link to BLAST:NP_067523.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001344807.1 112 P56212-1 112 100% 0 0
NP_001344808.1 112 P56212-1 112 100% 0 0
NP_067523.1 112 P56212-1 112 100% 0 0

Chromosomal Locations for CCDS 23340.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 75037917 75037961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 75052233 75052355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 75056635 75056805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (339 nt):
ATGTCCGCGGAAGTCCCCGAGGCAGCGTCTGCGGAGGAGCAAAAGGAAATGGAAGATAAAGTAACTAGTC
CAGAGAAAGCTGAAGAAGCAAAGTTAAAGGCAAGGTATCCTCACTTGGGACAAAAGCCTGGAGGGTCTGA
TTTTTTAAGGAAAAGATTGCAGAAAGGGCAAAAGTATTTTGATTCTGGGGACTACAACATGGCAAAAGCA
AAGATGAAGAACAAGCAGCTTCCTGCTGCAGCCCCGGATAAGACAGAGGTCACTGGTGACCACATTCCCA
CTCCACAGGACCTCCCTCAGCGGAAACCGTCCCTGGTTGCTAGCAAGCTGGCTGGCTGA

Translation (112 aa):
MSAEVPEAASAEEQKEMEDKVTSPEKAEEAKLKARYPHLGQKPGGSDFLRKRLQKGQKYFDSGDYNMAKA
KMKNKQLPAAAPDKTEVTGDHIPTPQDLPQRKPSLVASKLAG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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