NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS23257.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23257.1 Public Mus musculus 9 Lrrc49 23 108 98 CCDS HistoryNCBI Gene:102747Re-query CCDS DB by CCDS ID:23257.1Re-query CCDS DB by GeneID:102747See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23257.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000065603.11 ENSMUSP00000070606.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000065603.11Link to Ensembl Protein Viewer:ENSMUSP00000070606.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000065603Re-query CCDS DB by Protein ID:ENSMUSP00000070606
Original member Current member NCBI NM_145616.4 NP_663591.3 Accepted alive Link to Nucleotide Sequence:NM_145616.4Link to Protein Sequence:NP_663591.3Re-query CCDS DB by Nucleotide ID:NM_145616Re-query CCDS DB by Protein ID:NP_663591Link to BLAST:NP_663591.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_663591.3 752 Q91YK0-2 752 99.867% 0 1

Chromosomal Locations for CCDS 23257.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 60587688 60587891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 60593606 60593759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 60598086 60598195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 60601303 60601488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 60602579 60602816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 60610258 60610421 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 60615094 60615177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 60621569 60621716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 60649480 60649541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 60666289 60666432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 60671295 60671361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 60677080 60677283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 60680069 60680171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 60680505 60680702 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 60685035 60685122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 60687139 60687195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 60687812 60687859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2259 nt):
ATGATTCCCGGAAAATATCGCTCCGTTTCTGGCCGAGCTGCAAATAACGTGAACTGTGGACTTCATCTGG
TTATTCAAACGTCGTCACTTTCTGACAAAAACAAAGTTGAATTCAGGCTTAACAGAGAAACACCACCATT
TCCTGGTAGACTGTTACAGCATGACCTGGAGAGGAACTACTCAAGCAGGCAAGGAGACGGAAGAGTAATA
AGTCCTTCGCCTCGTAATAAGTCATCATGCATCTCATCCACAACTAACGTGACAGACCTCTGTGGGCTGG
ACATGAGAGCTGCCACAACCTCCTTGTCAGCATTTGGAGACTCTTCCATTCAGACACCTTCAAAGCCGAG
AATCCGGCAGGGCTGTCATAGTGCTGGCCCCAATGTATCTGGTGACCACATTAGTCTGGTGAGCTCATCC
ATGCCGGCGTTTCCTATTCTCCAGCGCTCTTCTGAAGAGAAAACACTTTACTCAGACAGGCTGACCCTAG
AAAGACAAAAGTTGACTGTGTGCCCTATCATCGACGGGGAAGAGCACCTTCGTTTGTTGAACTTTCAGCA
CAATTTTATAACTCGGATCCAAAATATTTCTAATCTACAGAGGCTAATATTCTTGGACTTATATGATAAC
CAGATTGAAGAAATTAGTGGACTTTCTACTCTGAAATCCCTTCGTGTCCTCCTGTTAGGGAAAAACAGAA
TCAAGAAAATCTCAAATCTGGAGAATCTAAAAAATTTAGATGTCTTGGACCTTCATGGAAATCAGATTAC
CAAAATTGAAAATGTTAATCATTTGTGTGATTTGAGAGTTCTAAACCTTGCCAGGAATCTCTTGAGTCAT
GTTGACAATCTCAACGGCCTGGATTCACTAACGGAACTTAACCTTCGGCACAACCAGATCACCTTTGTGA
GAGATGTGGATAATTTGCCCTGCCTCCAACGCCTCTTCCTCAGCTTCAACAATATAACTAGCTTTGAAAG
TGTTTCCTGCCTTGCCGAGTCAACTTCCCTCTCGGACATCACCTTTGATGGCAACCCAATAGCTCAAGAG
TCATGGTACAAACACACGGTCCTTCAGAATATGATGCAGCTGCGCCAGCTAGACATGAAGAGAATCACGG
AAGAAGAAAGACGCGTGGCATCTGTTGTGGCCAAAAAAGAGGAGGAGAAGAAGAGGGAGAGTCACAAGCA
GTCCTTGCTGAAGGAGAAGAAAAGGTTAACCATTAACAATGTCGCTCGAAAGTGGGACTTGCAGCAGCGA
GTAGCCAACATTGCCAGCACTCAGGACAGAAAGGACTCGGAGTCTCCGCCTCAGGAATCCTGTCAGCTCG
ACGGAGGCAACATCTCTGCCTTTCCAGAGGAAGCAGGGTCTCTAGATGCAGGGCTCAGCAGTGCGTTACA
AGGCTTGTCTGTCACAGAAACACACTTGGTGGAGATAGACGGAGAAACCCTCTCACTGTACGGCTCAGGG
GCGCTGGAATGCCTGGATCGAAACTGGAGTGTTCAAACAGCCGGCATGGTCACCACGGTCTCATTCACGT
TCATCGAGTTTGATGAAATTGTCCAAGTACTTCCCAAACTGAAGATGAAGTTTCCAAATTCTCTGCACCT
TAAATTCAGGGAGACCAACCTTGTGATGCTGCAGCAGTTCAATGCCCTGGCACAGCTGCGTCGGGTTGAC
CAGTTGACAATCGATCCTCAGGGAAACCCAGTGGTCAACTTTACACTCTGGAAGTACTACGTGCTGTTCA
GGCTCAGCCACTTCAGCATGCAGAAAATAAATGGAACAGAGGTGACTCAAAATGACATGATAATGGCTGA
AAGGCTCTTTGGAATCTTAGCACATGTAGCATCCTCCGAGCTGCCCCAGTACCGCATGATTTCAATTCTG
GGTGATGCCAGGAAAAAGCAATTCCGATATCTACTGGAAAGCAAAGGTAAAAAGCCTGGCATCATCTGTG
AGGAGACCAGTGACAGCAAGAGGTTCTTGGGGGAAAACACGAACCGCGCTACCCTGAATTACACCACCCG
AGAATTCTACCACGAGAAGCTGGAAGAAATAAAGGACAAGAAGAAGTTCTGCAGGTTGTATGTAGAAGAC
CTGGTGAAGGAAGCCACAGCCATCAACATGAAAAACGAGGCTCTGCAGAAGCTGTGGCCACAGATGTTCA
TCGAGCTTGTGAGAGACGCTGTCATAGAGATCCGCAGCAAGGATTCCTACATGAAACTCTGCCTGCAGCA
GATCACTGACCAGAAATAG

Translation (752 aa):
MIPGKYRSVSGRAANNVNCGLHLVIQTSSLSDKNKVEFRLNRETPPFPGRLLQHDLERNYSSRQGDGRVI
SPSPRNKSSCISSTTNVTDLCGLDMRAATTSLSAFGDSSIQTPSKPRIRQGCHSAGPNVSGDHISLVSSS
MPAFPILQRSSEEKTLYSDRLTLERQKLTVCPIIDGEEHLRLLNFQHNFITRIQNISNLQRLIFLDLYDN
QIEEISGLSTLKSLRVLLLGKNRIKKISNLENLKNLDVLDLHGNQITKIENVNHLCDLRVLNLARNLLSH
VDNLNGLDSLTELNLRHNQITFVRDVDNLPCLQRLFLSFNNITSFESVSCLAESTSLSDITFDGNPIAQE
SWYKHTVLQNMMQLRQLDMKRITEEERRVASVVAKKEEEKKRESHKQSLLKEKKRLTINNVARKWDLQQR
VANIASTQDRKDSESPPQESCQLDGGNISAFPEEAGSLDAGLSSALQGLSVTETHLVEIDGETLSLYGSG
ALECLDRNWSVQTAGMVTTVSFTFIEFDEIVQVLPKLKMKFPNSLHLKFRETNLVMLQQFNALAQLRRVD
QLTIDPQGNPVVNFTLWKYYVLFRLSHFSMQKINGTEVTQNDMIMAERLFGILAHVASSELPQYRMISIL
GDARKKQFRYLLESKGKKPGIICEETSDSKRFLGENTNRATLNYTTREFYHEKLEEIKDKKKFCRLYVED
LVKEATAINMKNEALQKLWPQMFIELVRDAVIEIRSKDSYMKLCLQQITDQK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH