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Report for CCDS23200.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23200.1 Public Mus musculus 9 Chrnb4 23 108 98 CCDS HistoryNCBI Gene:108015Re-query CCDS DB by CCDS ID:23200.1Re-query CCDS DB by GeneID:108015See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 23200.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034854.7 ENSMUSP00000034854.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034854.7Link to Ensembl Protein Viewer:ENSMUSP00000034854.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000034854Re-query CCDS DB by Protein ID:ENSMUSP00000034854
Original member Current member NCBI NM_148944.4 NP_683746.1 Accepted alive Link to Nucleotide Sequence:NM_148944.4Link to Protein Sequence:NP_683746.1Re-query CCDS DB by Nucleotide ID:NM_148944Re-query CCDS DB by Protein ID:NP_683746Link to BLAST:NP_683746.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_683746.1 495 Q8R493 495 100% 0 0

Chromosomal Locations for CCDS 23200.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 55030105 55030245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 55034642 55035632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 55036392 55036501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 55036587 55036631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 55043777 55043925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 55048444 55048495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1488 nt):
ATGAGGGGTACGCCCCTGCTCCTCGTCTCTCTGTTCGCTCTGCTTCAGCCTGGGGACTGCCGCCTGGCCA
ACGCAGAGGAGAAGCTGATGGATGATCTCCTGAACAAAACCCGCTACAACAACCTGATCCGCCCAGCCAC
CAGCTCCTCCCAGCTCATCTCCATCCGCCTGGAGCTATCACTGTCCCAGCTCATCAGTGTGAATGAGCGA
GAACAGATCATGACCACCAGCATCTGGCTGAAACAGGAATGGACTGACTACCGCCTGGCCTGGAACAGCT
CCTGCTATGAAGGGGTGAACATTCTGAGGATTCCTGCAAAGCGAGTCTGGTTGCCTGACATCGTGTTGTA
CAACAATGCCGATGGGACCTATGAGGTGTCTGTCTACACCAACGTGATCGTGCGTTCCAACGGCAGCATC
CAGTGGCTGCCCCCTGCCATCTACAAGAGTGCCTGCAAGATAGAGGTGAAGCACTTTCCCTTCGACCAGC
AGAACTGCACCCTCAAATTTCGCTCCTGGACCTATGACCACACAGAGATTGACATGGTTCTTAAATCACC
CACAGCCATCATGGATGACTTTACCCCCAGCGGTGAATGGGACATTGTGGCCCTCCCGGGTCGAAGGACA
GTGAACCCACAGGACCCCAGCTATGTGGACGTGACCTATGACTTCATCATCAAGCGCAAGCCACTCTTCT
ACACCATCAATCTGATCATCCCTTGTGTGCTCATCACGTCGCTGGCTATCCTGGTCTTCTACCTGCCCTC
CGACTGTGGGGAGAAGATGACGCTCTGCATCTCAGTGCTGCTGGCACTCACATTCTTCCTGCTGCTCATC
TCCAAGATCGTGCCTCCCACCTCCCTTGACATTCCCCTCATTGGCAAGTACCTCTTGTTCACCATGGTGC
TGGTCACCTTTTCCATCGTCACCACTGTGTGTGTCCTCAATGTGCACCACCGTTCACCCAGCACTCACAC
CATGGCATCCTGGGTCAAGGAGTGCTTCCTGCACAAGCTGCCCACCTTCCTCTTCATGAAGCGCCCTGGT
CTGGAAGTCAGCCCCGCCAGGGTCCCTCATTCCAGCCAGCTGCACTTGACCACAGCTGAAGCTACGTCCA
CCTCTGCCTTAGGCCCCAGCAGCCCATCCAACCTCTATGGGAATTCCATGTACTTTGTGAACCCTGTCCC
TGCCACTCCTAAGTCTGCAGTCAGCTCCCACACGGCAGGCCTCCCCAGGGATGCCCGGCTGAGGTCCTCT
GGGAGGTTCCGGCAAGATCTACAGGAAGCATTAGAGGGCGTCAGCTTCATCGCACAGCATTTGGAGAGTG
ATGATCGAGATCAGAGTGTCATCGAGGACTGGAAATTCGTCGCAATGGTCGTCGACCGCCTGTTCCTGTG
GGTGTTCGTGATTGTGTGTATTCTGGGCACCATGGGGCTCTTCCTGCCACCCCTCTTCCAGATCCACGCA
CCCTCCAAGGGCCTCTAG

Translation (495 aa):
MRGTPLLLVSLFALLQPGDCRLANAEEKLMDDLLNKTRYNNLIRPATSSSQLISIRLELSLSQLISVNER
EQIMTTSIWLKQEWTDYRLAWNSSCYEGVNILRIPAKRVWLPDIVLYNNADGTYEVSVYTNVIVRSNGSI
QWLPPAIYKSACKIEVKHFPFDQQNCTLKFRSWTYDHTEIDMVLKSPTAIMDDFTPSGEWDIVALPGRRT
VNPQDPSYVDVTYDFIIKRKPLFYTINLIIPCVLITSLAILVFYLPSDCGEKMTLCISVLLALTFFLLLI
SKIVPPTSLDIPLIGKYLLFTMVLVTFSIVTTVCVLNVHHRSPSTHTMASWVKECFLHKLPTFLFMKRPG
LEVSPARVPHSSQLHLTTAEATSTSALGPSSPSNLYGNSMYFVNPVPATPKSAVSSHTAGLPRDARLRSS
GRFRQDLQEALEGVSFIAQHLESDDRDQSVIEDWKFVAMVVDRLFLWVFVIVCILGTMGLFLPPLFQIHA
PSKGL


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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