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Report for CCDS23177.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23177.1 Public Mus musculus 9 Arhgap20 23 108 98 CCDS HistoryNCBI Gene:244867Re-query CCDS DB by CCDS ID:23177.1Re-query CCDS DB by GeneID:244867See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23177.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000065496.11 ENSMUSP00000065633.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000065496.11Link to Ensembl Protein Viewer:ENSMUSP00000065633.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000065496Re-query CCDS DB by Protein ID:ENSMUSP00000065633
Original member NCBI NM_175535.4 NP_780744.2 Updated not alive Link to Nucleotide Sequence:NM_175535.4Link to Protein Sequence:NP_780744.2Re-query CCDS DB by Nucleotide ID:NM_175535Re-query CCDS DB by Protein ID:NP_780744
Current member NCBI NM_175535.5 NP_780744.2 Accepted alive Link to Nucleotide Sequence:NM_175535.5Link to Protein Sequence:NP_780744.2Re-query CCDS DB by Nucleotide ID:NM_175535Re-query CCDS DB by Protein ID:NP_780744Link to BLAST:NP_780744.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_780744.2 1182 Q6IFT4-1 1182 100% 0 0

Chromosomal Locations for CCDS 23177.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 51765507 51765611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 51785736 51785818 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 51816677 51816841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 51821163 51821312 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 51824893 51824934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 51825839 51825923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 51826836 51826913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 51829330 51829396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 51831639 51831827 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 51838798 51838976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 51840394 51840555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 51843666 51843775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 51846125 51846314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 51847307 51847418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 51848568 51850399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3549 nt):
ATGGAAGCGATGTCTCCGCAGCAGGATGCTCTAGGGGCGCAGCCGGGGCGCTCCTCCTCGCTGACAGGCA
TGTCTCGCATCGCGGGAGGCCCTGGCACCAAGAAGAAAATGAAAACACTCGCAGAAAGGAGGAGAAGCGC
CCCGTCCCTCATCCTGGACAAAGCCTTACAGAAGCGGCCGAGCACCAGAGACAGCCATTCTGCCAGCATT
GACACGTGTGCATTCCTCTCGTCCTTCATGTGCTCCAGTCGCACTCTGCTGATTGATGGTCCAGTGGAAC
TTAAAAGAGGCCTGCAGAGGCAGGAGAGGCATCTTTTCCTATTCAACGATCTGTTTGTCTCAGCCAAAAT
CAAATATAACAACAACTTTAAGATAAAGAATAAAATAAGACTAACTGACATGTGGACAGCTAGCTGTGTG
GAGGAAGTGGGAGAAGGCAACATGAATGCTCAGAAGTCCTTTGTCCTGGGCTGGCCCACCGTGAACTTTG
TGGCTACTTTCAGTTCTCCAGAACAAAAGGACAAATGGCTGTCTCTCCTTCAGAGATACATCGCTCTAGA
AAAGGAGAAAGACTACCCGAAGAGCATCCCCCTCAAAATCTTTGCCAAGGACATTGGAAACTGTGCCTAT
TTTAAAACTATAACAGTGATGAATTCAGACACAGCGAGTGAAGTTATCAACATGTCACTGCAAATGTTAG
GAATAACTGGCTCTGAGAGAGATTACCAACTGTGGGTAAATTCTGGAAAAGAAGCGGCACCGTACCCACT
CATTGGACACGAGTATCCTTATGGAATTAAAATGAGCCACCTCCGAGACACTGCCCTTCTGACGCAGGGA
TCAAGAGACTCTGCCAGCCCATCCCAGCTCCAAGAGCCTTTCCTCATGGAGCAGCTGCCCCGCGAGATGC
AATGCCAGTTCATCCTGAAACCTACCCGCCTGGCGACAGCCCAGCAACTGAGCGATTCCAGCCAGAAGAC
ATTTAAAAGGAGGCGCTCTATCATCAACTGGGCTTTTTGGCGGGGTTCTAGCACACACCTGGACAACCTG
CCCATGTCACCAACATCCCCTATGCCAGGACAGCTCTTTGGAGTTTCTTTACCAGATCTTTGTGAGAACG
ACAATCTGCCAAAGCCTATCTTGGATATGCTTTCCTTCCTTAACCAAAAAGGCCCCCTCACAAAAGGCAT
CTTCAGGCAGTCGGCCAACATGAAATCTTGCAGAGAGCTAAAGGAGAAACTGAATTCTGGAATCGAAGTC
CACCTTGACTGTGAATCCATCTTTGTGATAGCATCTGTGTTGAAGGATTTTCTGAGAAATATCCCAGAAA
GTATCTTTTCATCAGATCTATATGATCACTGGGTCTGTGTAATGGATCAAGGAAATGATGAAGAAAAAAT
AAATATAATTCAAAGGCTATTAGATCAGCTTCCCAGAGCCAATGTTGTTTTCCTAAGGTATCTGTTTGGG
GTATTACACAACATTGAACAACATTCCTTGTCTAATCAGATGACTGCATTTAACTTAGCAGTGTGTATCG
CTCCAAGCATTCTTTGGCCTCCTGCTTCCTCCAGTCCAGAGCTAGAAAATGAATTTACAAAAAAGGTTTC
TCTTCTTATACAATTTCTGATTGAAAACTGCTGTAGGGTATTTGGAGAAGAAATCGCTTCTCTCTTGGGG
GAGCTTTCGGAGAGAAGCGACAGAGAACACACCCCAGATATAACTTGCTTCCAAATGAACGACTCCTCCT
ATGACAGCTTGGAAAACGAGCTCAATGAGGAAGCTGATGCTCCATGCAGTGACCTGGTCAAAAAGCTTGG
CCAGGGTAGCAGGAGCATGGACTCTGTCTTAACCCTCAGCGACTATGACCTTGAACAGCCTGAGGTGGAA
GGCCTCTTAACCCTGAGCAACTTTGACTTAGATCAGTCTAAAGAGGAGCACATTCCGATAAAGCCACCTC
TGGAGCCCAAGCCAGTGAATGTTTTCGTAGGCTACAGGAAGGTTTCACTAGGGGAGCACGCTAGGGCCCC
AGCTGGCCCAGGCACACTCAGCTGCCTGCCTGTGGCTGCAGCAGATGCCCCGAAAGTCCTGCGGCGGCAC
CGGCGCTCCTCAGAACCCAGCATTGACTATCTAGACACAAAGCTTTCCTATCTCCGGGAGTTTTACCAGA
AAAAGCTGCGCAAGTCCAGCTGCGATGCTGTCCTCTCTAGAAAAGATGAAGATTACCTGAAGCAGACCCA
GCCTCAGAAGAAAGGGGATAAGGTGTGTCTTAAACAGAGTTCAGTGACAGGCACTGACGTCAGCAAGAGA
AACACAGCTAATGAAAACATTAAGAAGAAAAGCTTGTCTGGTCATGAAGGAACTCAAGTGACACTTTTTA
CTAAGTCCAAGCCAGTACCCATCTCTGTGGCATCTTACAGCCACGGGTCCTCCCAGGATCATCCCAGGAA
GCAAGCCTTTGATGCAGACCCATGCCGGTTCTCCCCACCACACCTAACAGATGCCCAAAAGAGCTCAAGG
GTGCAACATCGGCGCTGTTCAGAACCCAGCATAGATGACCAGAACTACAAGCTGTCCTATCTCAGGGGGA
TCTATTCAATGAAACAAAATAAAGCCAGCTGTGAGGCTGGCCTCTTGCATGGGGAGGACGACTATCTCAG
AAGGCATAAGTCTTTGCAAATCGAGGGCCAAAAGCTTATTAATCAGAGTTTGGTCATGGGCATTGAGGTG
GGCAAGAGCAGCAGCTCTCACCAAAGCACTGAGAAGGTTTTGCCCCCAAGACTAAACCTTTGCCCAAGGG
CAAGCTATTCAAGCTTATCTTCTCCAGGCTCGTCCCCATCCGGCTCCTCTGTAAGCTCCCAGGACAGCGC
TTTCTCTCAGATCTCTGAACACTCCGTGTTTACGCCCACCGAAACCTCCTCACCAATAGATTGCACTTTC
CAGACACAAAGAAAACAAGAAGAGCTGTCTTCAGACTTTGACAGTCCCAGCCGCCTTTCCGGAATGCCCG
GTCCCTCCATGGGTCAGGCCAGCAGCCACCTAGCTTATTTAAGAAAGGGTACCACGGAGCAGCCATCACA
AATGCATTCTGTAACCCTTCACCCCAGTGCGTGGTTGAGAAGTGGCTTGGTCACTTTAAAAAACTGGTCC
CTCAAAAAGAAAACAAAAGCAGCCAGACCAGAAGACAGGAAAGTCTGTTCCCTGAAAGAGCCTCTGGAGT
TGCCGTCATGTGCTTCCGGTACCCCAGAGGCTGACTCTCTACAAGAGAGTCAGGATGACTTACAGGGAGA
TGAAGGACCTGGGCAAACAGCCTGTGGATTCAGTTCTTATGCCTGTCAGGACTCAGAGCAACATGCCGGC
TCTCCATTCCACCTGGCAGAAAGCAGACTCAAGCCTTGTATGAAGTTATATAAGGGAGAAGAGAGTGGAG
GGCAGTACCCTTGTGATAACCCTTGGGAAGGAGCCTCTTCAAGTCTGGAGACCACGGAGGATACAGCCAA
CCCAGGTGCAGAACCTACAACATTTGCGATGACGGGGACAGATATTTAA

Translation (1182 aa):
MEAMSPQQDALGAQPGRSSSLTGMSRIAGGPGTKKKMKTLAERRRSAPSLILDKALQKRPSTRDSHSASI
DTCAFLSSFMCSSRTLLIDGPVELKRGLQRQERHLFLFNDLFVSAKIKYNNNFKIKNKIRLTDMWTASCV
EEVGEGNMNAQKSFVLGWPTVNFVATFSSPEQKDKWLSLLQRYIALEKEKDYPKSIPLKIFAKDIGNCAY
FKTITVMNSDTASEVINMSLQMLGITGSERDYQLWVNSGKEAAPYPLIGHEYPYGIKMSHLRDTALLTQG
SRDSASPSQLQEPFLMEQLPREMQCQFILKPTRLATAQQLSDSSQKTFKRRRSIINWAFWRGSSTHLDNL
PMSPTSPMPGQLFGVSLPDLCENDNLPKPILDMLSFLNQKGPLTKGIFRQSANMKSCRELKEKLNSGIEV
HLDCESIFVIASVLKDFLRNIPESIFSSDLYDHWVCVMDQGNDEEKINIIQRLLDQLPRANVVFLRYLFG
VLHNIEQHSLSNQMTAFNLAVCIAPSILWPPASSSPELENEFTKKVSLLIQFLIENCCRVFGEEIASLLG
ELSERSDREHTPDITCFQMNDSSYDSLENELNEEADAPCSDLVKKLGQGSRSMDSVLTLSDYDLEQPEVE
GLLTLSNFDLDQSKEEHIPIKPPLEPKPVNVFVGYRKVSLGEHARAPAGPGTLSCLPVAAADAPKVLRRH
RRSSEPSIDYLDTKLSYLREFYQKKLRKSSCDAVLSRKDEDYLKQTQPQKKGDKVCLKQSSVTGTDVSKR
NTANENIKKKSLSGHEGTQVTLFTKSKPVPISVASYSHGSSQDHPRKQAFDADPCRFSPPHLTDAQKSSR
VQHRRCSEPSIDDQNYKLSYLRGIYSMKQNKASCEAGLLHGEDDYLRRHKSLQIEGQKLINQSLVMGIEV
GKSSSSHQSTEKVLPPRLNLCPRASYSSLSSPGSSPSGSSVSSQDSAFSQISEHSVFTPTETSSPIDCTF
QTQRKQEELSSDFDSPSRLSGMPGPSMGQASSHLAYLRKGTTEQPSQMHSVTLHPSAWLRSGLVTLKNWS
LKKKTKAARPEDRKVCSLKEPLELPSCASGTPEADSLQESQDDLQGDEGPGQTACGFSSYACQDSEQHAG
SPFHLAESRLKPCMKLYKGEESGGQYPCDNPWEGASSSLETTEDTANPGAEPTTFAMTGTDI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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