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Report for CCDS23164.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23164.1 Public Mus musculus 9 Pts 23 108 98 CCDS HistoryNCBI Gene:19286Re-query CCDS DB by CCDS ID:23164.1Re-query CCDS DB by GeneID:19286See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23164.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034570.6 ENSMUSP00000034570.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034570.6Link to Ensembl Protein Viewer:ENSMUSP00000034570.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000034570Re-query CCDS DB by Protein ID:ENSMUSP00000034570
Original member Current member NCBI NM_011220.3 NP_035350.1 Accepted alive Link to Nucleotide Sequence:NM_011220.3Link to Protein Sequence:NP_035350.1Re-query CCDS DB by Nucleotide ID:NM_011220Re-query CCDS DB by Protein ID:NP_035350Link to BLAST:NP_035350.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035350.1 144 Q9R1Z7 144 100% 0 0

Chromosomal Locations for CCDS 23164.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 50522213 50522336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 50522529 50522599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 50524723 50524779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 50525262 50525284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 50526870 50526949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 50528557 50528636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (435 nt):
ATGAGCGCGGCGGGTGACCTTCGTCGCCGCGCGCGACTGTCGCGCCTCGTGTCCTTCAGCGCGAGCCACC
GGCTGCACAGCCCATCTCTGAGCGATGAAGAGAACTTAAGAGTGTTTGGGAAATGCAACAATCCGAATGG
CCACGGGCACAACTATAAAGTTGTGGTGACAGTCCATGGAGAGATTGATCCTGTTACAGGAATGGTTATG
AATTTGACCGACCTCAAAGAATACATGGAGGAGGCCATCATGAAGCCTCTTGATCACAAGAACCTGGACC
TGGATGTGCCGTACTTTGCGGATGCTGTGAGCACGACAGAAAATGTAGCTGTCTACATCTGGGAAAGCCT
CCAGAAACTTCTTCCAGTGGGAGCTCTTTATAAAGTAAAAGTGTTTGAAACCGACAACAACATCGTAGTC
TATAAAGGAGAATAG

Translation (144 aa):
MSAAGDLRRRARLSRLVSFSASHRLHSPSLSDEENLRVFGKCNNPNGHGHNYKVVVTVHGEIDPVTGMVM
NLTDLKEYMEEAIMKPLDHKNLDLDVPYFADAVSTTENVAVYIWESLQKLLPVGALYKVKVFETDNNIVV
YKGE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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