NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS23090.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23090.1 Public Mus musculus 9 Tlcd5 23 108 98 CCDS HistoryNCBI Gene:235300Re-query CCDS DB by CCDS ID:23090.1Re-query CCDS DB by GeneID:235300See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23090.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000061833.5 ENSMUSP00000051435.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000061833.5Link to Ensembl Protein Viewer:ENSMUSP00000051435.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000061833Re-query CCDS DB by Protein ID:ENSMUSP00000051435
Original member Current member EBI ENSMUST00000213544.1 ENSMUSP00000150692.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000213544.1Link to Ensembl Protein Viewer:ENSMUSP00000150692.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000213544Re-query CCDS DB by Protein ID:ENSMUSP00000150692
Original member Current member NCBI NM_001034863.3 NP_001030035.1 Accepted alive Link to Nucleotide Sequence:NM_001034863.3Link to Protein Sequence:NP_001030035.1Re-query CCDS DB by Nucleotide ID:NM_001034863Re-query CCDS DB by Protein ID:NP_001030035Link to BLAST:NP_001030035.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001030035.1 245 Q3TYE7 245 100% 0 0

Chromosomal Locations for CCDS 23090.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 43111320 43111858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 43113461 43113659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (738 nt):
ATGGCAGTAGGTCTCTGTGTGCAGGTGCTGTGCAGCCTGGGTGGCTGGCTCTCACTCTATACATCTTTCT
GCTGCCTGAACAAGCACCGAAGCTGTGAGTGGAGCTGTCGGCTGGTGACCTTCACCCACGGAGTCCTCTC
CATAGGTCTGTCTGCTTATATTGGCTTCATCGATGGCCCTTGGCCTTTTACCCACCCAGGCTCACCGAAC
ACACCTCTCCAAGTTCACGTTCTGTGTCTTACCTTGGGCTACTTCATCTTCGACTTGGGCTGGTGCATCT
ATTTCCAGTCCGAGGGTCCCCTGATGCTGGCTCATCACACACTGAGCATCCTGGGGATCATCATGGCCCT
AGCACTTGGGGAGTCGGGCACAGAGGTCAATGCTGTACTCTTTGGAAGTGAGATCACCAACCCGCTGCTC
CAGATGCGATGGTTTCTCCGGGAAACTGGCCACTATCACAGTTTCACGGGGGATGTGGTGGACTTCCTCT
TTGTGGCTCTGTTCACTGGTGTGAGGATTGGTGTGGGCGCTCATCTCCTTTTCTGTGAAATGGTCTCACC
CACCCCCAAGTGGTTTGTGAAGGTTGGGGGTGTGGCGATGTATGCTGTGTCTTGGTGCTTCATGGTTAGC
ATCTGGCGCTTTGCATGGAAGAAAAGCATCAAGAAGTACCATGCGTGGAGAAGCAGACGGAATGAAGAGC
GGCAGCTAAGACACAATGGGCATCTCAAGACACACTAG

Translation (245 aa):
MAVGLCVQVLCSLGGWLSLYTSFCCLNKHRSCEWSCRLVTFTHGVLSIGLSAYIGFIDGPWPFTHPGSPN
TPLQVHVLCLTLGYFIFDLGWCIYFQSEGPLMLAHHTLSILGIIMALALGESGTEVNAVLFGSEITNPLL
QMRWFLRETGHYHSFTGDVVDFLFVALFTGVRIGVGAHLLFCEMVSPTPKWFVKVGGVAMYAVSWCFMVS
IWRFAWKKSIKKYHAWRSRRNEERQLRHNGHLKTH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH