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Report for CCDS23047.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23047.1 Public Mus musculus 9 Or8g35 23 108 98 CCDS HistoryNCBI Gene:258242Re-query CCDS DB by CCDS ID:23047.1Re-query CCDS DB by GeneID:258242See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 23047.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000073946.1 ENSMUSP00000073602.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000073946.1Link to Ensembl Protein Viewer:ENSMUSP00000073602.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000073946Re-query CCDS DB by Protein ID:ENSMUSP00000073602
Original member Current member EBI ENSMUST00000220176.1 ENSMUSP00000151246.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000220176.1Link to Ensembl Protein Viewer:ENSMUSP00000151246.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000220176Re-query CCDS DB by Protein ID:ENSMUSP00000151246
Original member Current member NCBI NM_207141.1 NP_997024.1 Accepted alive Link to Nucleotide Sequence:NM_207141.1Link to Protein Sequence:NP_997024.1Re-query CCDS DB by Nucleotide ID:NM_207141Re-query CCDS DB by Protein ID:NP_997024Link to BLAST:NP_997024.1

Chromosomal Locations for CCDS 23047.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 39469780 39470724 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (945 nt):
ATGGAAGAATTAAATCATACCTCAGTGACAGAGTTCATTCTTGCTGGTTTAACAGAGAATCCAGAGCTCC
AGTTGCCTCTATTCCTTACCTTCCTATCTGTCTATTTGTTTACAGTTGTTGGAAACCTTGGCATGATTGT
ATTGATTCTGATTAGTTCTCAGCTACATACACCTATGTATTATTTACTCAGCAGTCTGTCCTTTATTGAC
TGCTGTCAGTCTACTGTCATTGTTCCTAAAATGCTGTTGAACTTTGTGACAGAGAAGAATGTCATCCTGT
ACCCAGAATGCATAGCTCAGTTCTATTTCTTCTGTACTTTTGTTGTTGCAGAATGTCACATGTTGGCTGC
AATGGCATATGACCGCTATGTGGCTATATCTAACCCTTTGCTTTACAAAGTAACCATGTCCTATCAAGTC
TGTTTGTTGATGGTAGCTGTGGTGTATGGTATTGGCTTAATCAGTGCCACAGCTCACACAGTCTTCCTGC
TAAGATTGTTTTTCTGTAAGGCTGATAAAATAAACCACTACTTTTGTGATCTTTTCCCATTACTTGAGCT
GTCTTGCTCTAGTACTTTTATCAATGAAATATTAGCACTGTCCTTCAGTGCATTTAATATTATTGTACCA
GCCATGACCATCATTGGCTCTTACATCTTCATCATTATCAGCATTTTGCACATTAAATCCTCTGGGGGCA
GAGTCAAGGCCTTTAGAACCTGCAGCTCCCATATCTTGGCTGTTGCTATTTTCTTTGGTTCTACAACATT
CATGTATCTACAACCATCTTCAGTCAGCTCCATGGACCAAGGGAAAGTGTCATCTGTGTTTTATACCATT
GTTGTGCCTATGTTGAATCCCATGATCTACAGCCTGAGAAATAAAGATGTCAAAGTTGCCCTAAAAAAGT
TACTACAAAAGATGTTTCCTCAAAACAAGGAATAG

Translation (314 aa):
MEELNHTSVTEFILAGLTENPELQLPLFLTFLSVYLFTVVGNLGMIVLILISSQLHTPMYYLLSSLSFID
CCQSTVIVPKMLLNFVTEKNVILYPECIAQFYFFCTFVVAECHMLAAMAYDRYVAISNPLLYKVTMSYQV
CLLMVAVVYGIGLISATAHTVFLLRLFFCKADKINHYFCDLFPLLELSCSSTFINEILALSFSAFNIIVP
AMTIIGSYIFIIISILHIKSSGGRVKAFRTCSSHILAVAIFFGSTTFMYLQPSSVSSMDQGKVSSVFYTI
VVPMLNPMIYSLRNKDVKVALKKLLQKMFPQNKE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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