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Report for CCDS23023.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23023.1 Public Mus musculus 9 Or8g51 23 108 98 CCDS HistoryNCBI Gene:258432Re-query CCDS DB by CCDS ID:23023.1Re-query CCDS DB by GeneID:258432See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 23023.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000071425.1 ENSMUSP00000071372.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000071425.1Link to Ensembl Protein Viewer:ENSMUSP00000071372.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000071425Re-query CCDS DB by Protein ID:ENSMUSP00000071372
Original member Current member NCBI NM_146440.1 NP_666651.1 Accepted alive Link to Nucleotide Sequence:NM_146440.1Link to Protein Sequence:NP_666651.1Re-query CCDS DB by Nucleotide ID:NM_146440Re-query CCDS DB by Protein ID:NP_666651Link to BLAST:NP_666651.1

Chromosomal Locations for CCDS 23023.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 38697429 38698376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (948 nt):
ATGCAGGTGCAAATGGCAGATACAAATCACTCCACAGTGACTGAGTTCATCCTTGCTGGATTAACAGACA
AACCAGAGCTGCAGCTGCCCCTCTTCCTCCTCTTTCTTGGAATCTACCTGCTCACAGTGCTGGGGAACCT
GGGCATGATCATCCTGATCCTGCTCAGCTCCCACCTGCACACCCCCATGTACTTTTTCCTCAGCAGCCTG
TCCTTCATTGACCTCTGTTACTCCACTGTTATTACCCCGAAGATGTTGGTGAACTTTGTGGCAAAGAAGA
ATGTCATCTCCTATGAGGAATGTATGACTCAGCTCTATTTCTTCCTTGCTTTTGTTATATCTGAGTGTCA
CATGTTGGCTGCAATGGCATATGACCGCTATGTTGCCATTTGCAATCCCTTGCTTTACAATGTCACTATG
TCTTACCAAATCTGTTCCTGGATGGTAGGTGGGGTATATGGCATGGGTTTAATTGGTGCAGCAGTTCATA
CTCTCTGCATGCTAAGAGTGGTTTTCTGTAAGGCTAATATAATAAACCATTACTTCTGTGATCTTTTCCC
ATTGATGGAGCTTGCCTGCTCCAGTACTTATGTCAATGAGGTAGTACTCCTGTGTCTCAGTGCTTTCAAT
ATCTTTATTCCAACATTGACTATCTTGGGTTCTTACATCTTCATCATCATTAGTATCCTCCGTATCAAAT
CCACGGAAGGCAGATTCAAAGCCTTCAGCACATGTAGCTCCCACTTCTCTGCCGTTTCTGTCTTCTTTGG
TTCCCTGGCATTCATGTATCTGCAGCCCTTCTCTGTCAGCTCCAAAGACAAAGGCAAAGTGTCCTCTGTG
TTTTACACTACTATTGTGCCCATGCTGAACCCCATGATCTATAGCCTGAGGAATAGGGATGTTAAACTTG
CTCTAAATAAGTTATTTCAAAAGAAATTCCATGTGTAA

Translation (315 aa):
MQVQMADTNHSTVTEFILAGLTDKPELQLPLFLLFLGIYLLTVLGNLGMIILILLSSHLHTPMYFFLSSL
SFIDLCYSTVITPKMLVNFVAKKNVISYEECMTQLYFFLAFVISECHMLAAMAYDRYVAICNPLLYNVTM
SYQICSWMVGGVYGMGLIGAAVHTLCMLRVVFCKANIINHYFCDLFPLMELACSSTYVNEVVLLCLSAFN
IFIPTLTILGSYIFIIISILRIKSTEGRFKAFSTCSSHFSAVSVFFGSLAFMYLQPFSVSSKDKGKVSSV
FYTTIVPMLNPMIYSLRNRDVKLALNKLFQKKFHV


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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