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Report for CCDS22943.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22943.1 Public Mus musculus 9 Ntm 23 108 98 CCDS HistoryNCBI Gene:235106Re-query CCDS DB by CCDS ID:22943.1Re-query CCDS DB by GeneID:235106See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22943.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000075069.10 ENSMUSP00000074578.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000075069.10Link to Ensembl Protein Viewer:ENSMUSP00000074578.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000075069Re-query CCDS DB by Protein ID:ENSMUSP00000074578
Original member NCBI NM_172290.4 NP_758494.2 Updated not alive Link to Nucleotide Sequence:NM_172290.4Link to Protein Sequence:NP_758494.2Re-query CCDS DB by Nucleotide ID:NM_172290Re-query CCDS DB by Protein ID:NP_758494
Current member NCBI NM_172290.5 NP_758494.2 Accepted alive Link to Nucleotide Sequence:NM_172290.5Link to Protein Sequence:NP_758494.2Re-query CCDS DB by Nucleotide ID:NM_172290Re-query CCDS DB by Protein ID:NP_758494Link to BLAST:NP_758494.2

Chromosomal Locations for CCDS 22943.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 28996534 28996634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 29009226 29009377 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 29012101 29012221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 29014127 29014261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 29109396 29109521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 29179022 29179254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 29411556 29411640 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 29962845 29962926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1035 nt):
ATGAAAACCATCCAGGCAAAAATGCACAATTCTATCTCGTGGGCAATCTTCACGGGGCTGGCGGCTCTGT
GCCTCTTCCAAGGAGTGCCGGTGCGTAGCGGAGATGCCACCTTTCCCAAAGCTATGGACAACGTGACGGT
CAGGCAGGGGGAGAGCGCCACCCTCAGGTGCACAATTGACAACCGAGTCACCCGGGTGGCCTGGCTAAAC
CGCAGTACCATCCTCTATGCTGGAAATGACAAGTGGTGCCTAGATCCTCGTGTGGTCCTCCTGAGTAACA
CCCAGACCCAGTACAGCATTGAGATCCAGAATGTGGATGTGTACGATGAGGGCCCTTATACCTGCTCGGT
ACAGACAGACAACCACCCTAAGACCTCCAGGGTCCACCTCATTGTACAAGTATCTCCCAAAATTGTAGAG
ATTTCTTCAGATATCTCCATTAATGAAGGGAACAACATCAGCCTCACTTGCATAGCCACAGGTAGACCGG
AGCCTACAGTAACCTGGAGACATATTTCTCCCAAGGCCGTTGGCTTTGTGAGTGAGGATGAGTACCTGGA
GATCCAGGGCATCACTCGGGAACAGTCAGGCGAGTACGAGTGCAGCGCCTCCAACGACGTGGCGGCACCA
GTGGTACGAAGAGTGAAGGTCACCGTGAACTATCCACCATACATCTCAGAAGCTAAGGGCACAGGTGTCC
CCGTGGGGCAGAAGGGGACTCTGCAGTGTGAAGCTTCCGCAGTCCCTTCAGCAGAATTTCAATGGTTCAA
GGATGACAAAAGACTGGTCGAAGGAAAGAAGGGAGTCAAAGTGGAAAACAGACCTTTCCTTTCAAAACTC
ACCTTTTTCAACGTCTCTGAACATGACTATGGGAACTACACATGTGTGGCCTCCAACAAGCTGGGTCACA
CCAACGCCAGCATCATGCTATTTGGTCCCGGTGCTGTCAGTGAGGTCAACAATGGGACATCAAGGAGGGC
AGGCTGCATTTGGCTCCTCCCTCTTCTGGTCTTACACCTGCTCCTCAAATTTTGA

Translation (344 aa):
MKTIQAKMHNSISWAIFTGLAALCLFQGVPVRSGDATFPKAMDNVTVRQGESATLRCTIDNRVTRVAWLN
RSTILYAGNDKWCLDPRVVLLSNTQTQYSIEIQNVDVYDEGPYTCSVQTDNHPKTSRVHLIVQVSPKIVE
ISSDISINEGNNISLTCIATGRPEPTVTWRHISPKAVGFVSEDEYLEIQGITREQSGEYECSASNDVAAP
VVRRVKVTVNYPPYISEAKGTGVPVGQKGTLQCEASAVPSAEFQWFKDDKRLVEGKKGVKVENRPFLSKL
TFFNVSEHDYGNYTCVASNKLGHTNASIMLFGPGAVSEVNNGTSRRAGCIWLLPLLVLHLLLKF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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