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Report for CCDS22741.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22741.1 Public Mus musculus 8 Cdt1 23 108 98 CCDS HistoryNCBI Gene:67177Re-query CCDS DB by CCDS ID:22741.1Re-query CCDS DB by GeneID:67177See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22741.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000006760.2 ENSMUSP00000006760.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000006760.2Link to Ensembl Protein Viewer:ENSMUSP00000006760.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000006760Re-query CCDS DB by Protein ID:ENSMUSP00000006760
Original member Current member NCBI NM_026014.3 NP_080290.3 Accepted alive Link to Nucleotide Sequence:NM_026014.3Link to Protein Sequence:NP_080290.3Re-query CCDS DB by Nucleotide ID:NM_026014Re-query CCDS DB by Protein ID:NP_080290Link to BLAST:NP_080290.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080290.3 557 Q8R4E9 557 100% 0 0

Chromosomal Locations for CCDS 22741.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 122568056 122568271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 122569087 122569245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 122569324 122569475 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 122569904 122570101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 122570194 122570339 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 122570441 122570538 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 122571241 122571429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 122571696 122571848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 122571937 122572138 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 122572494 122572654 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1674 nt):
ATGGCGCAAAGTCGTGTTACCGATTTCTATGCGTGCCGTCGCCCTGGCCTTACGACTCCGCGGGCCAAGT
CGATCTGTCTCACCCCGAGCCCTGGTGGCCTCGTGGCTCCTGCGTTCACCCGGAGCAGCAGCCGCAAGCG
CGCCCGGCCCCCAGCCGAACCCGGGAGTGACCAGCCCGCGCCGCTCGCGCGCCGGAGGTTACGGCTGCCT
GGATTGGACTCCTGCCCCAGTTCTCTGCCTGAGCCCAGTTCCCCAGCTGAGCCCAGCCCTCCAGCTGACC
CTAGCCCTCCAGCTGACCCTGGCTCCCCCGTTTGCCCATCCCCCGTCAAGCGAACAAAGAGTACAACTGT
TTATGTTGGTCAACAGCCGGGCAAGATCCCCTCAGAGGACTCCGTCTCTGAGCTCCAGTCCTGCCTGAGG
CGGGCACGGAAGTTGGGAGCCCAGGCACGGGCCCTGAGAGCCCGAGTCCAAGAGAATGCTGTGGAGCCTA
GTACCCCAGATGCCAAGGTGCCCACAGAGCAACCATGTGTCGAGAAAGCTCCTGCCTACCAGCGCTTCCA
TGCTCTGGCTCAGCCTGGTCTCCCAGGCCTTGTCCTACCCTACAAGTATCAGGTGCTAGTTGAGATGTTC
CGCAGCATGGACACCATTGTGAGCATGCTCCACAATCGCTCTGAGACTGTGACCTTTGCCAAAGTCAAGC
AAGGTGTTCAGGAGATGATGCGCAAGCGCTTTGAAGAGCGCAATGTGGGCCAGATCAAAACCGTGTATCC
CACGTCGTATCGCTTCCGCCAGGAGTGCAATGTCCCCACCTTCAAGGACAGCATCAAGAGATCTGATTAC
CAGCTCACCATCGAGCCCTTGCTGGGCCAGGAGGCTGGCGGTGCCACCCAGCTCACAGCCACGTGCCTCC
TGCAGCGCCGGCAAGTCTTCCGGCAGAACCTGGTGGAACGTGTCAAGGAACAGCACAAGGTCTTCCTGGC
TTCACTGAACCCCCCCATGGCGGTGCCGGACGACCAGCTGACCCGCTGGCATCCGCGCTTCAATGTGGAC
GAGGTGCCTGACATTGAGCCAGCTGAACTGCCCCAGCCTCCTGTCACAGAGAAGCTCACCACTGCCCAGG
AAGTGCTGGCCCGTGCCCGGAGCTTGATGACACCCAAGATGGAGAAGGCCCTGAGCAACCTGGCCCTGCG
CTCGGCTGAGCCCGGTAGCCCTGGGACCTCTACTCCACCACTCCCGGCCACTCCGCCAGCCACCCCACCT
GCTGCCTCTCCGAGCGCCCTGAAGGGTGTGTCCCAAGCACTGCTAGAGCGGATAAGGGCCAAGGAGGTCC
AGAAGCAGCTGGCAAGGATGACACGGTGCCCCGAGCAGGAGCTTCGCCTGCAGCGGTTAGAGCGTCTGCC
AGAGCTGGCCCGCGTGCTGCGCAATGTCTTCGTGTCTGAGCGGAAGCCGGCACTCACTATGGAGGTGGTC
TGTGCAAGGATGGTGGACAGTTGCCAAACTGCTCTGAGTCCAGGGGAGATGGAGAAACATCTGGTGCTCC
TGGCAGAGTTGCTGCCGGACTGGCTCAGCCTGCATCGCATCCGCACGGATACCTACGTCAAGCTGGACAA
GGCTGTTGACCTGGCTGGCCTCACTGCGAGGCTGGCCCACCACGTCCACGCCGAGGGGCTGTGA

Translation (557 aa):
MAQSRVTDFYACRRPGLTTPRAKSICLTPSPGGLVAPAFTRSSSRKRARPPAEPGSDQPAPLARRRLRLP
GLDSCPSSLPEPSSPAEPSPPADPSPPADPGSPVCPSPVKRTKSTTVYVGQQPGKIPSEDSVSELQSCLR
RARKLGAQARALRARVQENAVEPSTPDAKVPTEQPCVEKAPAYQRFHALAQPGLPGLVLPYKYQVLVEMF
RSMDTIVSMLHNRSETVTFAKVKQGVQEMMRKRFEERNVGQIKTVYPTSYRFRQECNVPTFKDSIKRSDY
QLTIEPLLGQEAGGATQLTATCLLQRRQVFRQNLVERVKEQHKVFLASLNPPMAVPDDQLTRWHPRFNVD
EVPDIEPAELPQPPVTEKLTTAQEVLARARSLMTPKMEKALSNLALRSAEPGSPGTSTPPLPATPPATPP
AASPSALKGVSQALLERIRAKEVQKQLARMTRCPEQELRLQRLERLPELARVLRNVFVSERKPALTMEVV
CARMVDSCQTALSPGEMEKHLVLLAELLPDWLSLHRIRTDTYVKLDKAVDLAGLTARLAHHVHAEGL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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