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Report for CCDS22717.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22717.1 Public Mus musculus 8 Cibar2 23 108 98 CCDS HistoryNCBI Gene:436062Re-query CCDS DB by CCDS ID:22717.1Re-query CCDS DB by GeneID:436062See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22717.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000048786.12 ENSMUSP00000038825.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000048786.12Link to Ensembl Protein Viewer:ENSMUSP00000038825.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000048786Re-query CCDS DB by Protein ID:ENSMUSP00000038825
Original member Current member NCBI NM_001033980.2 NP_001029152.2 Accepted alive Link to Nucleotide Sequence:NM_001033980.2Link to Protein Sequence:NP_001029152.2Re-query CCDS DB by Nucleotide ID:NM_001033980Re-query CCDS DB by Protein ID:NP_001029152Link to BLAST:NP_001029152.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001029152.2 292 Q3V2J0 292 100% 0 0

Chromosomal Locations for CCDS 22717.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 120166572 120166697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 120167304 120167405 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 120168511 120168624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 120169705 120169809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 120171740 120171745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 120171888 120171989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 120172076 120172144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 120174710 120174944 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 120177314 120177333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (879 nt):
ATGAACGTCGTCCTCTCCAGGGACAGCCAGGTGAGGGCCATGGAGAACACGGTGACAAATGCTGAGAGGT
ATTTCGGTCAGTTCTGCTCACTGCTGGCCTCCTACACACGCAAGACGGCCCGACTTCGTGACAAGGCTGA
CCAGCTGGTGAAGCAGCTGATAGACTTTGCCAACACGGAGAACCCTGAGCTGCGGGCCACCATTCGAGAC
TTCGCCGAGGACCTTGCCAAAGTGCAGGATTATCGGCAGGCAGAGGTTGAGAGGCTGGAGGCCAAGGTCA
TCAGCCCCCTGAAGCTCTACGGTGCCCAAATAAAGCAGACCCGGGCAGATATCAAGAAATGTAAACGTGT
CCAAAATAACGAGATTAAACAACTGGAAAAGCTGGAGAAACTGAGGCAGAAGTCACCCTCAGATCGACAA
ATGATCTCCCAGGCGGAGACCAGTGCACAGAGGGCCTCAGTGGACACCAACCGTTCTACCCTCCACCTAG
TGGAGACCGTGGATGCCTTCCAGGAACAGAAACTGAAGGACCTCCGGAGAATCTTCTCTGACTTTGTGAC
CATCGAGATGGTTTTCCACGCAAAGGCGGTGGAGGTGTATTCCAGCGCTTTCCAGACCTTGGAGAACTAT
GACCTGGAGAGAGACCTGCAGGACTTCAGAGCCAAGACGCGTGGAATTTACGGGCATGGTGAAGCTCGGC
CGCTCACAGACACCAACCCCGCTCCATCTGTCCCCTGGCCTCTGGCCAGCCAGAGTGCTCAGAGTACCAT
GGCACGCCAGGGGAAGGAGGCTGGAGGTGAAGAGGACAGTGAGACTGATTCCGTGGAGGAGATCCCCCTG
GAGGACCTCAAGGGACAACAGCAAGGACCCCGAGACTAG

Translation (292 aa):
MNVVLSRDSQVRAMENTVTNAERYFGQFCSLLASYTRKTARLRDKADQLVKQLIDFANTENPELRATIRD
FAEDLAKVQDYRQAEVERLEAKVISPLKLYGAQIKQTRADIKKCKRVQNNEIKQLEKLEKLRQKSPSDRQ
MISQAETSAQRASVDTNRSTLHLVETVDAFQEQKLKDLRRIFSDFVTIEMVFHAKAVEVYSSAFQTLENY
DLERDLQDFRAKTRGIYGHGEARPLTDTNPAPSVPWPLASQSAQSTMARQGKEAGGEEDSETDSVEEIPL
EDLKGQQQGPRD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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