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Report for CCDS22608.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22608.1 Public Mus musculus 8 Acd 23 108 98 CCDS HistoryNCBI Gene:497652Re-query CCDS DB by CCDS ID:22608.1Re-query CCDS DB by GeneID:497652See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22608.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000042608.7 ENSMUSP00000048180.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000042608.7Link to Ensembl Protein Viewer:ENSMUSP00000048180.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000042608Re-query CCDS DB by Protein ID:ENSMUSP00000048180
Original member NCBI NM_001012638.2 NP_001012656.1 Updated not alive Link to Nucleotide Sequence:NM_001012638.2Link to Protein Sequence:NP_001012656.1Re-query CCDS DB by Nucleotide ID:NM_001012638Re-query CCDS DB by Protein ID:NP_001012656
Current member NCBI NM_001012638.3 NP_001012656.1 Accepted alive Link to Nucleotide Sequence:NM_001012638.3Link to Protein Sequence:NP_001012656.1Re-query CCDS DB by Nucleotide ID:NM_001012638Re-query CCDS DB by Protein ID:NP_001012656Link to BLAST:NP_001012656.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001012656.1 416 Q5EE38-1 416 100% 0 0

Chromosomal Locations for CCDS 22608.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 105698256 105698328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105698408 105698499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105698614 105698963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105699395 105699491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105699579 105699730 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105699861 105699895 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105700004 105700048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105700282 105700358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105700447 105700540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105700703 105700839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105700920 105701018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1251 nt):
ATGTCCGATTCAGGGTTGCTGGCCCTACAGCCCTGGATTCGAGAGCTGATCCTAGGTTCAGAAACACTGT
CAAGTCCACGAACCGGGCAGCTGCTCAAGGTACTCCAGGACTCGGAGACTCCCGGCCCTTCTTCCGCCCC
TGACACACCTGACACCGGGGCCGTGTTACTTGTGTCAGACGGAACCCACAGTGTCCGATGCGTGGTGACG
CGCAACGCCATCGACACCTCCGACTGGGAGGAGAAGGAGCTCGGATTCCGCGGGACCGAGGGCCGGCTCC
TGCTACTGCAGGCCTGCGGGCTCCGCGTTCAGGTGGCTCAGGACCATGCGCCTGCGGAGTTCTACCTCCA
GGTGGATCGCTTTAACCTGCTGCCCACGGAGCAGCCCCGGATACAGGTGACTGGTTGCAATCAGGATTCA
GATGTGCAGAGAAAACTCAATGAGTGTCTTGAGGACCACCTCTCAGAGTCTGCTTCTTCCAGTGCAGGCC
TAACCCTGTCCCAGCTTCTGGATGAGGTGAGGGAGGACCAGGATCATCGGGGAGCCCTAGTGTGTCTAGC
TAAGAGCTGCCTGGTGCTGAAAGGTCCTTGTACAACCACCCCCCTCACCGACTGGATCACCTCTGGCTCC
CAGGCCTTGGGAAAAGCTGTGTTCACTGTGTCTGGCTCATTGCTGCACATCCCTGAGGGTGAGGAGCAGA
TTTTGAGTTCTACAGGCTCCAGTCAGAAGGCTCGGGGAACCTCCGCTTCACCCAGCCACATGCCCCTGGA
GGAAAGTGGTGCCAGCGTTAGCCTTCTGTCAGCCTTGGCTACATCGGACCCTGGGCAGATGGACAGTTCC
CAGTCTCCACCAGCTGTTGGCTCAACCTCCCCAAGAGCTCAGGCCCCCACTTCTCCACCCTGCAATTCTA
CACCCAGCTCCCTACTCTTGAACTGCAGCCCCAGTCTTTCACCCCTTCACCCTGCCCCTAGATCACACCA
GTCCTGTGAGACCAGAGCTCAGGCTCCTAAGCTGGAGTTCCAGTGCTCCTTCAAGAAACGGCAGCTTCTC
CCAAGAACCAGCGCCCAGGAGCTCTGCTCTGTGTGGGAACCCCCAGAGAGGCATCGTGATACTTCTGCAT
TCCAGTATAAATACGAGACACCCTCTGCCTCCCTCCACACCCAGGTCCAAACTGCCAGGCTCTCTCCTCA
GCTTGTAGCTTGGGCCTTGAATATAGTGATGGAGTCAGAGTCTGAGTTAACCCAGGTATGA

Translation (416 aa):
MSDSGLLALQPWIRELILGSETLSSPRTGQLLKVLQDSETPGPSSAPDTPDTGAVLLVSDGTHSVRCVVT
RNAIDTSDWEEKELGFRGTEGRLLLLQACGLRVQVAQDHAPAEFYLQVDRFNLLPTEQPRIQVTGCNQDS
DVQRKLNECLEDHLSESASSSAGLTLSQLLDEVREDQDHRGALVCLAKSCLVLKGPCTTTPLTDWITSGS
QALGKAVFTVSGSLLHIPEGEEQILSSTGSSQKARGTSASPSHMPLEESGASVSLLSALATSDPGQMDSS
QSPPAVGSTSPRAQAPTSPPCNSTPSSLLLNCSPSLSPLHPAPRSHQSCETRAQAPKLEFQCSFKKRQLL
PRTSAQELCSVWEPPERHRDTSAFQYKYETPSASLHTQVQTARLSPQLVAWALNIVMESESELTQV


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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