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Report for CCDS22573.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22573.1 Public Mus musculus 8 Tk2 23 108 98 CCDS HistoryNCBI Gene:57813Re-query CCDS DB by CCDS ID:22573.1Re-query CCDS DB by GeneID:57813See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22573.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000050211.6 ENSMUSP00000053616.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000050211.6Link to Ensembl Protein Viewer:ENSMUSP00000053616.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000050211Re-query CCDS DB by Protein ID:ENSMUSP00000053616
Original member Current member EBI ENSMUST00000212275.1 ENSMUSP00000148642.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000212275.1Link to Ensembl Protein Viewer:ENSMUSP00000148642.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000212275Re-query CCDS DB by Protein ID:ENSMUSP00000148642
Original member Current member NCBI NM_021028.3 NP_066356.3 Accepted alive Link to Nucleotide Sequence:NM_021028.3Link to Protein Sequence:NP_066356.3Re-query CCDS DB by Nucleotide ID:NM_021028Re-query CCDS DB by Protein ID:NP_066356Link to BLAST:NP_066356.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_066356.3 270 Q9R088 270 99.2593% 0 2

Chromosomal Locations for CCDS 22573.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 104228253 104228351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 104229213 104229293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 104230545 104230624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 104231160 104231248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 104236772 104236845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 104238744 104238833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 104241116 104241169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 104243385 104243459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 104247647 104247684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 104248401 104248533 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (813 nt):
ATGCTGCTGCGGTCGCTGCGTAGTTGGGCTGCCCGGTCCCTGCGTAGCGTGGGCCCGGGGAGCTCCGGGA
GCCCCGGGAGCCTCGATTCGGGCGCCGGGCCGCTGTGGGCACCTCGCCGCGCCTGGCCTCCGGATAAAGA
TAGAGAAAATGATAAGGAGAAAAAAGCAGTGGTTTGTATTGAGGGCAATATTGCAAGTGGGAAGACGACA
TGCCTGGAGTTCTTCTCCAATACAACAGACGTCGAGGTGTTAATGGAGCCTGTGCTCAAGTGGAGAAATG
TCCATGGCCATAACCCTCTGAGCCTCATGTACCATGATGCCAGCCGATGGGGCCTCACACTGCAGACGTA
CGTGCAGCTCACCATGCTGGACCAGCACACGCGCCCTCAGATGTCACCTGTACGGTTGATGGAAAGGTCA
ATTTACAGCGCAAGATACATTTTTGTAGAAAACCTGTATAGAAGTGGGAAGATGCCCGAGGTTGACTACG
CGATTCTGTCTGAGTGGTTTGACTGGATCGTCAGGAACATTGATGTCTCTGTTGATCTGATAGTTTATCT
GCGAACCACTCCCGAAATCTGCTACCAGAGATTAAAGATGAGGTGCCGGGAAGAGGAGAAAGTCATTCCG
ATGGAATACCTCCATGCTATTCACCGCCTCTACGAGGAGTGGCTGGTCAACGGGAGCCTCTTCCCAGCTG
CAGCCCCTGTTCTGGTGATTGAGGCTGACCACAACTTGGAGAAAATGTTAGAACTCTTTGAACAAAACCG
GGCCCGGATATTAACTCCAGAGAACTGGAAGCATGGACCCTAG

Translation (270 aa):
MLLRSLRSWAARSLRSVGPGSSGSPGSLDSGAGPLWAPRRAWPPDKDRENDKEKKAVVCIEGNIASGKTT
CLEFFSNTTDVEVLMEPVLKWRNVHGHNPLSLMYHDASRWGLTLQTYVQLTMLDQHTRPQMSPVRLMERS
IYSARYIFVENLYRSGKMPEVDYAILSEWFDWIVRNIDVSVDLIVYLRTTPEICYQRLKMRCREEEKVIP
MEYLHAIHRLYEEWLVNGSLFPAAAPVLVIEADHNLEKMLELFEQNRARILTPENWKHGP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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