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Report for CCDS22475.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22475.1 Public Mus musculus 8 Nacc1 23 108 98 CCDS HistoryNCBI Gene:66830Re-query CCDS DB by CCDS ID:22475.1Re-query CCDS DB by GeneID:66830See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22475.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000001975.5 ENSMUSP00000001975.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000001975.5Link to Ensembl Protein Viewer:ENSMUSP00000001975.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000001975Re-query CCDS DB by Protein ID:ENSMUSP00000001975
Original member Current member NCBI NM_025788.3 NP_080064.3 Accepted alive Link to Nucleotide Sequence:NM_025788.3Link to Protein Sequence:NP_080064.3Re-query CCDS DB by Nucleotide ID:NM_025788Re-query CCDS DB by Protein ID:NP_080064Link to BLAST:NP_080064.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080064.3 514 Q7TSZ8 514 100% 0 0

Chromosomal Locations for CCDS 22475.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 84673042 84673304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84674765 84674862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84674999 84675104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84676085 84676258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84676341 84677244 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1545 nt):
ATGGCGCAGACCTTACAGATGGAGATTCCAAACTTCGGCAACAGCATCCTTGAGTGCCTCAATGAGCAGC
GGCTACAGGGACTATACTGTGACGTGTCAGTAGTGGTGAAGGGCCATGCCTTCAAAGCCCACCGTGCTGT
GCTGGCCGCTAGTAGCTCTTACTTCCGGGACCTCTTCAACAGCAGCCGCAGTGCTGTGGTAGAACTGCCG
GCCGCTGTGCAGCCACAGTCATTCCAGCAGATCCTCACATTTTGTTACACAGGCCGGCTGAGCATGAACA
TGGGAGACCAGTTTCTGCTCATCTACACAGCCGGCTTCCTGCAGATCCAGGAGATCATGGAGAAAGGCAC
TGAGTTCTTCCTCAAAGTTAGCTCTCCAAGTTGCGACTCCCAGGGCCTGCACCCGGAGGAGGCCCCATCC
TCAGAGCCTCAGAGTCCTGTAGCGCAGACATTGGGGTGGCCAGCCTGTAGCACGCCACTGCCCCTTGTGT
CACGGGTCAAGACAGAACAGGAGTTGGACTCAGTGCAATGCACACCCATGGCCAAGAGGCTGTGGGACAG
CAGCCAGAAGGAGGCTGGAGGCAGTGGTGGCAACAACGGCAGCCGCAAGATGGCCAAGTTCTCCACGCCA
GACCTGGCCCTTAACCGGATGCCTCAGCCACTCTCAATGGCCACAGCTACAGCAGCAGTGGCTGTGGTTG
CAGTAGGGGGATGTGTGAGTGGGCCCAGCATGTCAGAGCGGACCAGTCCAGGTACCTCCAGTGCTTACAC
CAGTGACAGCCCCAGCTCCTACCACAATGAAGAGGACGAAGAAGAAGATGCAGGTGAGGAGGGCACAGAT
GAGCAGTACCGTCAGATCTGCAATATGTATACAATGTACAGTATGTTGAACGTTGGCCAGACAGCTGAGA
AGGTAGAGGCCCTTCCTGAGCAGGTGGTCCTTGAGTCCCGCAGTCGCATTCGAGTGCGGCAAGACCTGGC
ATCTCTCCCAGCTGAACTTATCAACCAGATTGGCAATCGTTGCCACCCAAAGCTCTACGATGAAGGTGAC
CCCTCAGAGAAGCTGGAGCTCGTGACAGGCACCAATGTATACATCACAAGGGCACAGCTTATGAACTGCC
ACGTCAGTGCAGGCACGCGGCACAAGGTCTTGCTGCGGCGGCTTCTGGCTTCCTTCTTTGACCGGAATAC
ACTGGCCAATAGCTGTGGCACCGGCATCCGTTCTTCCACCAATGACCCCAGACGAAAGCCACTGGACAGT
CGTGTCCTCCATGCTGTCAAGTACTACTGCCAGAACTTCGCCCCCAACTTCAAGGAGAGCGAGATGAATG
CCATTGCAGCTGACATGTGCACCAATGCCCGCCGAGTGGTACGTAAAAGCTGGCTGCCCAAGACTAAGCC
GCTGCACCTGGTGGAGGGTGATAACTACAGCAGCTTCATCAGCGACACTTGCAAGATAGAACCGGACATG
ATGAGCATGGAACACAGCTTCGAGACAGCCAGCCACGATGGCGAGGCTGGCCCTTCAGCTGAGGTTCTCC
AGTAA

Translation (514 aa):
MAQTLQMEIPNFGNSILECLNEQRLQGLYCDVSVVVKGHAFKAHRAVLAASSSYFRDLFNSSRSAVVELP
AAVQPQSFQQILTFCYTGRLSMNMGDQFLLIYTAGFLQIQEIMEKGTEFFLKVSSPSCDSQGLHPEEAPS
SEPQSPVAQTLGWPACSTPLPLVSRVKTEQELDSVQCTPMAKRLWDSSQKEAGGSGGNNGSRKMAKFSTP
DLALNRMPQPLSMATATAAVAVVAVGGCVSGPSMSERTSPGTSSAYTSDSPSSYHNEEDEEEDAGEEGTD
EQYRQICNMYTMYSMLNVGQTAEKVEALPEQVVLESRSRIRVRQDLASLPAELINQIGNRCHPKLYDEGD
PSEKLELVTGTNVYITRAQLMNCHVSAGTRHKVLLRRLLASFFDRNTLANSCGTGIRSSTNDPRRKPLDS
RVLHAVKYYCQNFAPNFKESEMNAIAADMCTNARRVVRKSWLPKTKPLHLVEGDNYSSFISDTCKIEPDM
MSMEHSFETASHDGEAGPSAEVLQ


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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