NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS22444.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22444.1 Public Mus musculus 8 Usp38 23 108 98 CCDS HistoryNCBI Gene:74841Re-query CCDS DB by CCDS ID:22444.1Re-query CCDS DB by GeneID:74841See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 22444.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000042724.7 ENSMUSP00000039943.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000042724.7Link to Ensembl Protein Viewer:ENSMUSP00000039943.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000042724Re-query CCDS DB by Protein ID:ENSMUSP00000039943
Original member Current member NCBI NM_027554.2 NP_081830.2 Accepted alive Link to Nucleotide Sequence:NM_027554.2Link to Protein Sequence:NP_081830.2Re-query CCDS DB by Nucleotide ID:NM_027554Re-query CCDS DB by Protein ID:NP_081830Link to BLAST:NP_081830.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081830.2 1042 Q8BW70 1042 100% 0 0

Chromosomal Locations for CCDS 22444.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 80981819 80981980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 80984438 80985800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 80987487 80987593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 80990007 80990100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 80993196 80993389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 80995682 80995840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 81001053 81001154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 81005332 81005461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 81012167 81012302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 81013755 81014436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3129 nt):
ATGGACAAGATTCTGGAAGGCCTGGTGAGCTCCTCGCACCCGCTGCCCCTCAAGCGGATGATTGTGCGGA
AGGTGGTGGAGTTCGCGGAGCATTGGCTCGACGAGGCGCAGTGCGAGGCCATGTTTGACCTGACGACCCG
CCTCATCCTGGAGGGCCAGGACCCTTTCCAGCGACAAGTGGGCCACCAGGTGCTGGAGGCCTACGCGCGG
TACCACCGGCCGGAGTTCGAGTCCTTCTTCAACAAGACTTTCGTGTTGGGCCTCCTTCAGCAGGGCTACC
ACTCAGTGGACAGGAAGGACGTCGCCATCCTGGACTACATTCACAACGGCCTGAAGCTGATTATGAGCTG
CCCGTCGGTGCTGGATCTCTTCAGCCTGCTCCAGGTGGAGGTCCTGCGAATGGTTTGCGAGAGGCCGGAG
CCAGTGCTCTGTGCCCGGCTGAGCGACCTCCTGACCGATTTCGTGCAGTGCGTCCCCAAAGGGAAACTGT
CAGTTACCTTCTGTCAACAGCTGGTTCGAACGATAGGTCATTTCCAGTGCGTGTCCACTCAGGAGAAGGA
ACTACGGGAGTATGTCTCCCAGGTAACGAAAGTGAGTACCTTACTACAGAATATTTGGAAGGCTGAGCCC
TCCACGCTGCTACCTTCTCTGCAAGAAGTTTTTGCAAGCATCTCTTCCACAGATGCATCCTTTGAGCCCT
CGGTTGCCTTGGCAAGCCTGGTGCAGCATATTCCTCTGCAGATGATCACAGTCCTCATCAGGAGCCTAAC
CACCGACCCAAATGTAAAAGATGCGAGTATGACCCAAGCTCTCTGCAGAATGATTGACTGGCTGTCCTGG
CCATTGGCTCAGCATGTAGATACGTGGGTAATTGCTCTCCTGAAAGGACTGGCAGCTGTTCAGAAGTTTA
CTATTTTGATAGATGTTACTTTGCTGAAAATAGAACTGGTTTTTAACCGACTTTGGTTTCCTCTCGTGAG
ACCTGGTGCTCTTGCAGTCCTCTCTCATATGCTGCTTAGTTTTCAGCATTCTCCTGAGGCATTCCATGTG
ATTGTCCCTCATATAGTTAACTTGGTTCACTCCTTCAGAAGTGATGGCCTACCTTCCAGCACAGCCTTCC
TAGTACAGTTAACAGAGTTGGTTCACTGTATGATGTACCATTACTCCGGATTCCCAGATCTCTATGAGCC
TATTCTGGAGGCAGTAAAGGACTTTCCTAAGCCCAGTGAAGAAAAGATTAAGCTGATTCTCAATCAAAGC
GCCTGGACTTCTCAATCCAATGCTTTGGCATCTTGCTTGTCTAGACTTTCTGGAAAATCTGAAACTGGAA
AAACTGGTCTTATTAACCTGGGAAACACGTGTTACATGAACAGTGTTTTACAAGCATTGTTTATGGCTAC
AGAGTTCAGAAGACAAGTATTATCTTTAAATCTAAATGGGTGTAATTCGTTAATGAAAAAATTACAACAT
CTTTTTGCTTTTTTGGCTCATACACAAAGGGAAGCTTACGCACCTCGGATATTTTTTGAGGCTTCCAGAC
CTCCGTGGTTTACTCCCAGGTCACAACAGGACTGCTCTGAGTACCTCAGGTTTCTGCTGGACAGACTCCA
TGAAGAAGAAAAGATCTTGCGAGTTCAGTCCTCACATAAGCCTTCGGAAGGTCTGGACTGTGCTGAAACT
TGTTTACAAGAGGTGACCAGTAAGGTAGCAGTGCCCACAGAGTCTCCTGGTACAGGTGACAGTGAGAAGA
CTCTAATAGAGAAAATGTTTGGAGGGAAGCTACGGACTCACATCTGCTGCCTAAACTGTGGGAGTACCTC
ACACAAAGTTGAAGCCTTCACAGATCTTTCGCTAGCCTTTTGTCCTAGCCCTTCTGTGGAAGACCTGTCT
TTCCAAGATACAGCTTCGTTACCCAGTGCTCAAGATGATGGGCTAATGCAAACCAGTGTCGCTGACCCAG
AAGAAGAGCCAGTAGTTTATAATCCAGCAACAGCTGCCTTTGTCTGCGACTCAGTTGTGAATCAAAGAGT
ATTAGGCAGTCCTCCTGTTGAGTTTCACTGTGCTGAAAGCTCTTCTGTCCCTGAAGAATCTGCAAAGATT
CTCATCAGTAAAGATGTACCTCAGAACCCAGGAGGTGAAAGCACAACTTCAGTGACTGACTTACTAAACT
ACTTTCTGGCTCCAGAGGTTCTTACTGGGGAGAACCAATACTACTGTGAAAGCTGTGCCTCTCTACAGAA
CGCAGAGAAAACTATGCAAATCACGGAGGAGCCTGAGTATCTTATCCTTACGCTCCTGAGATTCTCCTAC
GATCAGAAGTACCATGTGAGAAGAAAAATTTTAGACAATGTGTCACTGCCTCTGGTTTTGGAGTTGCCAG
TTAAAAGAACTGCTTCCTTCTCTTCCTTGTCCCAGAGTTGGTCTGTAGATGTTGACTTCACTGATATTAA
TGAGAACCTACCTAAAAAATTAAAACCTTCTGGGACTGAAGAAGCTTTCTGCCCCAAATTAGTGCCCTAC
CTATTAAGTTCTGTTGTTGTGCACTCTGGTGTGTCCTCTGAGAGTGGCCATTACTACTCTTATGCCAGAA
ACATCACAGGTACAGAGTCTTCATACCAGATGTGCCCCCAGTCTGAAAGTCTGGCATTAGCACCCTCCCA
GAGTTGTTTACTAGGGGTAGAAAGCCCCAATACAGTCATTGAACAGGACTTGGAAAATAAGGAAATGTCA
CAAGAGTGGTTTTTATTTAATGACAGCAGGGTGACATTTACTTCATTTCAGTCAGTTCAGAAAATCACAA
GTAGGTTTCCAAAAGACACAGCTTATGTGCTTTTGTACAAAAAACAAAGCAGAGCTAATGGCATAGACAG
TGACAATCCAGCCAGTGGTGTCTGGGCCAATGGAGATCCACCCCTACAGAAAGAGCTGATGGATGCCATA
ACAAAGGACAACAAGCTGTATTTGCAGGAACAAGAATTGAATGCTCGAGCCCGGGCCCTGCAAGCTGCAT
CTGCTTCCTGTTCGTTCCGACCCAATGGATTTGATGACAATGACCCACCAGGAAGCTGTGGGCCAACTGG
TGGGGGCGGTGGAGGAGGCTTCAATACAGTTGGCAGACTCGTATTTTGA

Translation (1042 aa):
MDKILEGLVSSSHPLPLKRMIVRKVVEFAEHWLDEAQCEAMFDLTTRLILEGQDPFQRQVGHQVLEAYAR
YHRPEFESFFNKTFVLGLLQQGYHSVDRKDVAILDYIHNGLKLIMSCPSVLDLFSLLQVEVLRMVCERPE
PVLCARLSDLLTDFVQCVPKGKLSVTFCQQLVRTIGHFQCVSTQEKELREYVSQVTKVSTLLQNIWKAEP
STLLPSLQEVFASISSTDASFEPSVALASLVQHIPLQMITVLIRSLTTDPNVKDASMTQALCRMIDWLSW
PLAQHVDTWVIALLKGLAAVQKFTILIDVTLLKIELVFNRLWFPLVRPGALAVLSHMLLSFQHSPEAFHV
IVPHIVNLVHSFRSDGLPSSTAFLVQLTELVHCMMYHYSGFPDLYEPILEAVKDFPKPSEEKIKLILNQS
AWTSQSNALASCLSRLSGKSETGKTGLINLGNTCYMNSVLQALFMATEFRRQVLSLNLNGCNSLMKKLQH
LFAFLAHTQREAYAPRIFFEASRPPWFTPRSQQDCSEYLRFLLDRLHEEEKILRVQSSHKPSEGLDCAET
CLQEVTSKVAVPTESPGTGDSEKTLIEKMFGGKLRTHICCLNCGSTSHKVEAFTDLSLAFCPSPSVEDLS
FQDTASLPSAQDDGLMQTSVADPEEEPVVYNPATAAFVCDSVVNQRVLGSPPVEFHCAESSSVPEESAKI
LISKDVPQNPGGESTTSVTDLLNYFLAPEVLTGENQYYCESCASLQNAEKTMQITEEPEYLILTLLRFSY
DQKYHVRRKILDNVSLPLVLELPVKRTASFSSLSQSWSVDVDFTDINENLPKKLKPSGTEEAFCPKLVPY
LLSSVVVHSGVSSESGHYYSYARNITGTESSYQMCPQSESLALAPSQSCLLGVESPNTVIEQDLENKEMS
QEWFLFNDSRVTFTSFQSVQKITSRFPKDTAYVLLYKKQSRANGIDSDNPASGVWANGDPPLQKELMDAI
TKDNKLYLQEQELNARARALQAASASCSFRPNGFDDNDPPGSCGPTGGGGGGGFNTVGRLVF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH