NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS22442.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22442.1 Public Mus musculus 8 Smarca5 23 108 98 CCDS HistoryNCBI Gene:93762Re-query CCDS DB by CCDS ID:22442.1Re-query CCDS DB by GeneID:93762See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 22442.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000043359.8 ENSMUSP00000044361.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000043359.8Link to Ensembl Protein Viewer:ENSMUSP00000044361.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000043359Re-query CCDS DB by Protein ID:ENSMUSP00000044361
Original member Current member NCBI NM_053124.2 NP_444354.2 Accepted alive Link to Nucleotide Sequence:NM_053124.2Link to Protein Sequence:NP_444354.2Re-query CCDS DB by Nucleotide ID:NM_053124Re-query CCDS DB by Protein ID:NP_444354Link to BLAST:NP_444354.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_444354.2 1051 Q91ZW3 1051 100% 0 0

Chromosomal Locations for CCDS 22442.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 80701063 80701128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 80702128 80702235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 80704605 80704817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 80705219 80705337 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 80705447 80705579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 80708683 80708805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 80709113 80709226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 80709656 80709766 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 80710557 80710676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 80711657 80711805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 80713934 80714066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 80716449 80716601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 80717522 80717643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 80719578 80719804 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 80720688 80720797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 80724169 80724237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 80725990 80726121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 80726211 80726366 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 80727616 80727795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 80728473 80728573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 80730095 80730195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 80733690 80733856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 80736689 80736763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 80738923 80739096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3156 nt):
ATGTCGTCCGCGGTGGAGCCTCCGCCGCCCCCGCCTCCCGAGAGCGCGCCTTCCAAGCCCTCGGCGGCGG
GCGCCGGCGGGAGCAGCAGCGGCAACAAAGGCGGCCCCGAGGGCGGCGCGGCGCCCGCGGCTCCGTGTGC
TGCGGGCTCGGGCCCCGCGGACACCGAGATGGAGGAAGTATTTGATCATGGATCACCTGGAAAGCAAAAA
GAAATCCAAGAACCAGATCCTACATATGAAGAAAAAATGCAAACTGACCGAGCAAATAGATTTGAGTATT
TATTAAAGCAGACAGAGCTGTTCGCACATTTCATTCAGCCTGCTGCTCAGAAGACTCCAACCTCACCCTT
GAAGATGAAACCAGGGCGCCCACGGGTAAAAAAGGATGAAAAACAGAATTTGCTTTCAGTTGGAGATTAC
CGACACCGTAGAACGGAGCAAGAGGAGGATGAAGAGCTATTAACAGAAAGTTCCAAAGCAACTAATGTTT
GTACTCGATTTGAAGATTCTCCATCATATGTAAAATGGGGTAAACTGAGAGATTATCAGGTGCGAGGATT
GAATTGGCTCATCTCTCTGTATGAGAATGGCATCAATGGGATCCTTGCAGATGAAATGGGTTTGGGAAAG
ACACTTCAAACAATTTCTCTTCTTGGATACATGAAACACTATAGAAATATTCCTGGTCCTCATATGGTTT
TGGTTCCCAAGTCTACATTGCACAACTGGATGAGTGAATTCAAGAAATGGGTACCAACACTTAGGTCTGT
TTGCTTGATAGGAGATAAAGAGCAAAGAGCTGCATTTGTCAGGGATGTTTTATTACCAGGAGAGTGGGAT
GTGTGTGTCACATCTTATGAAATGCTTATTAAAGAGAAGTCTGTGTTCAAAAAATTCAACTGGAGATACT
TAGTTATAGATGAAGCTCACAGGATAAAAAATGAAAAATCTAAGTTGTCAGAAATAGTGAGAGAATTCAA
GACTACAAATCGGCTGTTGCTAACAGGGACGCCTCTTCAGAACAACCTGCATGAGCTCTGGTCACTTCTA
AACTTTTTGTTACCAGATGTGTTTAATTCAGCTGATGACTTTGATTCCTGGTTTGATACAAATAATTGCC
TTGGGGATCAAAAGCTAGTTGAGAGGCTTCATATGGTTTTGCGTCCATTCCTCCTTCGTCGAATTAAAGC
TGATGTTGAAAAGAGTTTGCCTCCAAAAAAAGAAGTAAAAATCTATGTGGGTCTTAGCAAAATGCAAAGA
GAATGGTATACTCGGATATTAATGAAAGATATAGACATATTAAACTCAGCAGGGAAGATGGACAAAATGA
GGCTATTGAACATTTTGATGCAGTTGAGGAAATGCTGCAATCATCCTTATCTCTTCGATGGAGCTGAACC
TGGTCCACCGTACACAACAGATATGCATCTAGTTACCAACAGTGGCAAGATGGTGGTGTTAGACAAGCTA
CTCCCTAAACTGAAAGAACAAGGTTCAAGAGTACTAATCTTTAGTCAGATGACAAGAGTATTAGACATTT
TGGAAGATTATTGCATGTGGAGAAATTATGAGTACTGCAGGTTGGATGGACAGACACCCCATGATGAGAG
ACAAGACTCCATCAATGCATACAATGAACCAAATAGCACAAAGTTTGTATTTATGCTAAGCACACGTGCT
GGTGGTCTGGGCATCAATCTTGCAACTGCTGATGTAGTCATTTTATATGACTCAGATTGGAATCCGCAAG
TTGATCTTCAGGCTATGGACCGTGCCCATAGAATTGGACAAACGAAGACTGTCCGAGTGTTTCGCTTTAT
AACTGATAACACTGTGGAAGAAAGAATAGTGGAACGTGCTGAGATGAAACTTAGACTGGATTCGATAGTA
ATTCAACAAGGGAGGCTTGTAGATCAGAACCTGAACAAAATTGGGAAAGATGAAATGCTTCAAATGATTC
GACATGGTGCTACACATGTGTTTGCTTCAAAAGAAAGTGAAATCACTGATGAGGATATTGATGGTATTTT
AGAAAGAGGTGCAAAGAAGACTGCAGAAATGAACGAAAAGCTCTCCAAGATGGGTGAAAGTTCACTTAGA
AACTTTACGATGGACACAGAGTCCAGTGTTTATAACTTTGAAGGAGAAGACTATAGAGAAAAACAAAAGA
TTGCATTCACAGAGTGGATTGAACCACCAAAAAGAGAAAGAAAAGCCAACTATGCTGTTGATGCATATTT
CAGGGAAGCTCTCCGTGTTAGTGAGCCTAAAGCACCCAAGGCACCTCGACCTCCAAAACAACCAAATGTT
CAGGATTTCCAGTTCTTTCCTCCGCGTTTATTTGAATTACTGGAAAAAGAAATTCTGTATTACAGGAAAA
CTATTGGGTATAAGGTACCTCGGAGTCCTGATCTACCTAATGCAGCACAGGCACAGAAAGAGGAACAGCT
AAAAATTGATGAAGCAGAGCCCCTCAATGACGAGGAGTTAGAGGAAAAAGAGAAGCTTCTGACACAGGGG
TTTACAAATTGGAATAAGAGAGATTTTAACCAGTTTATCAAGGCTAATGAGAAGTGGGGTCGTGATGATA
TTGAAAATATAGCCAGAGAAGTAGAAGGAAAAACTCCAGAAGAAGTCATTGAATACTCAGCTGTGTTCTG
GGAAAGATGCAATGAGCTTCAGGACATAGAGAAGATTATGGCTCAGATTGAAAGGGGAGAGGCAAGAATT
CAAAGAAGAATAAGTATCAAGAAAGCACTAGATACAAAGATTGGACGGTACAAAGCACCCTTTCATCAGC
TAAGAATATCATATGGTACTAACAAAGGAAAAAACTATACTGAAGAAGAGGATCGTTTTCTCATTTGTAT
GCTGCACAAGCTTGGCTTCGACAAGGAAAATGTGTATGATGAATTACGACAATGCATCCGAAACTCCCCT
CAGTTTAGATTTGATTGGTTTCTCAAGTCCAGAACTGCGATGGAGCTCCAGAGGAGGTGTAATACCTTAA
TTACTTTGATTGAAAGAGAAAATATGGAACTAGAAGAAAAGGAGAAGGCAGAGAAAAAGAAAAGAGGACC
AAAACCTTCCACACAGAAACGTAAGATGGACGGTGCCCCTGATGGCCGTGGAAGAAAAAAGAAGCTGAAA
CTATGA

Translation (1051 aa):
MSSAVEPPPPPPPESAPSKPSAAGAGGSSSGNKGGPEGGAAPAAPCAAGSGPADTEMEEVFDHGSPGKQK
EIQEPDPTYEEKMQTDRANRFEYLLKQTELFAHFIQPAAQKTPTSPLKMKPGRPRVKKDEKQNLLSVGDY
RHRRTEQEEDEELLTESSKATNVCTRFEDSPSYVKWGKLRDYQVRGLNWLISLYENGINGILADEMGLGK
TLQTISLLGYMKHYRNIPGPHMVLVPKSTLHNWMSEFKKWVPTLRSVCLIGDKEQRAAFVRDVLLPGEWD
VCVTSYEMLIKEKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWSLL
NFLLPDVFNSADDFDSWFDTNNCLGDQKLVERLHMVLRPFLLRRIKADVEKSLPPKKEVKIYVGLSKMQR
EWYTRILMKDIDILNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPGPPYTTDMHLVTNSGKMVVLDKL
LPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHDERQDSINAYNEPNSTKFVFMLSTRA
GGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIV
IQQGRLVDQNLNKIGKDEMLQMIRHGATHVFASKESEITDEDIDGILERGAKKTAEMNEKLSKMGESSLR
NFTMDTESSVYNFEGEDYREKQKIAFTEWIEPPKRERKANYAVDAYFREALRVSEPKAPKAPRPPKQPNV
QDFQFFPPRLFELLEKEILYYRKTIGYKVPRSPDLPNAAQAQKEEQLKIDEAEPLNDEELEEKEKLLTQG
FTNWNKRDFNQFIKANEKWGRDDIENIAREVEGKTPEEVIEYSAVFWERCNELQDIEKIMAQIERGEARI
QRRISIKKALDTKIGRYKAPFHQLRISYGTNKGKNYTEEEDRFLICMLHKLGFDKENVYDELRQCIRNSP
QFRFDWFLKSRTAMELQRRCNTLITLIERENMELEEKEKAEKKKRGPKPSTQKRKMDGAPDGRGRKKKLK
L


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH