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Report for CCDS22416.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22416.1 Public Mus musculus 8 Med26 23 108 98 CCDS HistoryNCBI Gene:70625Re-query CCDS DB by CCDS ID:22416.1Re-query CCDS DB by GeneID:70625See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22416.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000058534.6 ENSMUSP00000058697.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000058534.6Link to Ensembl Protein Viewer:ENSMUSP00000058697.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000058534Re-query CCDS DB by Protein ID:ENSMUSP00000058697
Original member Current member NCBI NM_027485.4 NP_081761.2 Accepted alive Link to Nucleotide Sequence:NM_027485.4Link to Protein Sequence:NP_081761.2Re-query CCDS DB by Nucleotide ID:NM_027485Re-query CCDS DB by Protein ID:NP_081761Link to BLAST:NP_081761.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081761.2 588 Q7TN02 588 100% 0 0

Chromosomal Locations for CCDS 22416.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 72495487 72497106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 72497523 72497597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 72547895 72547966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1767 nt):
ATGACAGCGGCTCCGGCGTCTCCGCAGCAGATGAGGGACCGGCTGCTACAGGCCATCGACTCCCAGAGCA
ACATCCGGAACATGGTGGCAGTGTTGGAAGTGATCTCCAGTCTGGAGAGATACCCCATCACCAAAGAGGC
ACTGGAGGAGACACGACTAGGGAAGCTCATCAATGATGTCCGCAAGAAAACCAAGAATGAGGAGCTGGCC
AAGCGGGCCAAGAGGCTGCTACGAAGCTGGCAGAAGCTCATCGAGCCTGTACACCAGAACGAAGTGGCAC
TACGGGCACTGGCAGGAGCTGCAGGCTCTGCCAATGGGGGTGCGCACAACTGCCGACCAGAGATGGGAGT
GGCTGGTGCACCCAAGAGCATCCATGACCTGAAGAATCGCAACGACATCCAAAGGCTCCCTGGGCAACGG
CTAGATAGGCTGGGCAGCCGTAAGCGCAGGGGGGACCAGCGTGACCTGGGCCACCCAGGGCCACCCCACA
AAGTTTCCAAAGGCAGTCCTGACCCTCTGGTTCCCAATGCATCCCCTCTCCCCACCAATGGGATCAGCGG
GAGCCCAGAGAGCTTACCCAGCCCCCTGGATGGCAGTGGGCACTTGGGCCCTGATGGCAGCCGCCTGGAG
CCCAGTGATAATGAGAAGCACAGCACCAAGATTCCCGTGAACGCCGTGCGGCCGCGCCCCAGCTCTCCCG
GCTTGGGCAAACCCCCAGTTCCCTGCCTGCAGACCAAGGCTGCACAGTTGCAGCAGTTGGACAGGGCAGA
TGAGTCCCCAGGCCCTCCCTATCCCAGGGGGTCCTCTCGCTGCTCCTTCAGCCCCCGGAACTCACGGCAC
GAAGGCTCCTTTTCACGGCATCGGAGCTCTTACATACCCAAGGGCCAGGTGTCCAGCCCTTCCCCATGGC
CCCAGCCACCGGACAACACGCAGGTACCATCCCCACTCCCGCTGGCCCAGCCACCCACGCCCCCTGTGCG
CCGTCAGGAGCTGCTGCCTAATGCTGAGAGCCCTGTGCACTGGCCAGAGCAGTCTGAGGGCCACCCACGG
CTAACGGGGCCAGCCTGCAGGGCTGGATTTTCTCCAGATTCCTCCAAGGCGGACAGTGATGCTACCTCTT
CGGGTGGCTCGGACAGCAAAAAGAAAAAGAGGTACCGACCTCGAGACTACACAGTGAACTTGGACGGGCA
GGTGGCTGAGGCTGGTGTTAAACCTGTGCGGTTAAAAGAGCGGAAGCTCACCTTTGACCCCATGACAAGA
CAGATCAGGCCTCTGACCCAGAAAGAGCCGGTGCGGGCTGACAGCCCAGTACCCACAGAGCAGCTGCCTA
GGACAGAGCTGGAGCAGCAGGAGGTCAAGGCCAGCCTCCAGAGCCCTTTTGAGCAGACGAACTGGAAGGA
GCTATCACGAAATGAGATCATACAGTCCTACCTGAGCCGCCAGAGCAGCTTGCTATCCTCCTCAGGCGCA
CAGACCCCAGGTGCGCACCACTTTATGGCTGAATACCTGAAGCAGGAGGAGAGCAGTCGGCAAGGGGCCC
GGCAGCCCCATGTGCTGCTACCACTGCCCACACCCACTGACCTACCAGGGCTCACACGTGAGGTCACGCA
GGATGATCTGGACAGAATCCAGGCCCAGCAATGGCCAGGGGTTAACGGGTGTGAAGACACACAGGGTAAT
TGGTATGACTGGACACAGTGTATATCGCTCGACCCTCATGGTGACGATGGGCGCTTGAACATTCTGCCTT
ATGTCTGCTTGGACTGA

Translation (588 aa):
MTAAPASPQQMRDRLLQAIDSQSNIRNMVAVLEVISSLERYPITKEALEETRLGKLINDVRKKTKNEELA
KRAKRLLRSWQKLIEPVHQNEVALRALAGAAGSANGGAHNCRPEMGVAGAPKSIHDLKNRNDIQRLPGQR
LDRLGSRKRRGDQRDLGHPGPPHKVSKGSPDPLVPNASPLPTNGISGSPESLPSPLDGSGHLGPDGSRLE
PSDNEKHSTKIPVNAVRPRPSSPGLGKPPVPCLQTKAAQLQQLDRADESPGPPYPRGSSRCSFSPRNSRH
EGSFSRHRSSYIPKGQVSSPSPWPQPPDNTQVPSPLPLAQPPTPPVRRQELLPNAESPVHWPEQSEGHPR
LTGPACRAGFSPDSSKADSDATSSGGSDSKKKKRYRPRDYTVNLDGQVAEAGVKPVRLKERKLTFDPMTR
QIRPLTQKEPVRADSPVPTEQLPRTELEQQEVKASLQSPFEQTNWKELSRNEIIQSYLSRQSSLLSSSGA
QTPGAHHFMAEYLKQEESSRQGARQPHVLLPLPTPTDLPGLTREVTQDDLDRIQAQQWPGVNGCEDTQGN
WYDWTQCISLDPHGDDGRLNILPYVCLD


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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