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Report for CCDS22415.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22415.2 Public Mus musculus 8 Slc35e1 23 108 98 CCDS HistoryNCBI Gene:270066Re-query CCDS DB by CCDS ID:22415.2Re-query CCDS DB by GeneID:270066See the combined annotation on chromosome 8 in Sequence Viewer

Public Note for CCDS 22415.1
The coding region has been updated to extend the N-terminus to one that is more supported by available conservation, transcript and protein data.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 22415.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000152080.7 ENSMUSP00000115754.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000152080.7Link to Ensembl Protein Viewer:ENSMUSP00000115754.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000152080Re-query CCDS DB by Protein ID:ENSMUSP00000115754
Original member Current member NCBI NM_177766.3 NP_808434.2 Accepted alive Link to Nucleotide Sequence:NM_177766.3Link to Protein Sequence:NP_808434.2Re-query CCDS DB by Nucleotide ID:NM_177766Re-query CCDS DB by Protein ID:NP_808434Link to BLAST:NP_808434.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_808434.2 409 Q8CD26 409 100% 0 0

Chromosomal Locations for CCDS 22415.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 72483766 72483993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 72484661 72484906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 72488121 72488246 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 72489452 72489589 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 72491842 72491912 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 72492166 72492586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1230 nt):
ATGGCGGCGGCGGCAACCGCGGGTCCCGGCGCGGGCGCAGGGGTCCCGGGCGCGGGTGGCGGCGGCGGGG
CGCGCGAGGGTGCGCGGGTGGCGGTGCTGTGTCTACTATGGTACGCGCTGAGCGCGGGCGGTAACGTGGT
CAACAAGGTGATTTTGAGCGCCTTCCCGTTCCCGGTCACCGTGTCGCTGTGCCACATCCTAGCGCTGTGC
GCGGGGCTGCCGCCGCTGCTGCGCGCCTGGCGCGTGCCGCCCGCGCCACCCGTGTCGGGCCCCGGACCCG
GCCCGCATCCGGCGTCCGGCCCGCTGCTGCCGCCGCGCTTCTATCCGCGTTACGTACTGCCGCTTGCCTT
TGGCAAGTACTTCGCGTCGGTGTCGGCGCACGTCAGCATCTGGAAGGTGCCGGTCTCCTACGCGCACACC
GTCAAGGCCACCATGCCCATCTGGGTGGTCCTCCTGTCCCGGATCATCATGAAGGAGAAACAGAGCACCA
AGGTATACCTGTCACTGGTCCCCATCATCAGCGGAGTCCTGCTAGCCACTGTCACAGAGCTGTCCTTCGA
CGTGTGGGGGCTGGTCAGCGCCCTGGCAGCCACGCTATGCTTCTCCCTTCAGAACATCTTCTCCAAAAAG
GTGTTGAGGGACTCCAGGATCCACCACCTGCGGCTGCTCAACATCCTGGGCTGCCACGCCGTGTTCTTCA
TGATCCCCACGTGGGTTCTGGTGGACCTCTCCACCTTCCTGGTCAGCAGTGACCTGGCCTATGTGTCTCA
GTGGCCCTGGACGCTGCTGCTCTTGGCAGTCAGTGGCTTCTGCAACTTTGCACAGAATGTTATTGCCTTC
AGCATTCTCAACCTCATCAGCCCACTTAGCTACTCAGTGGCCAACGCCACCAAGAGGATCATGGTCATCA
CTGTTTCCCTCATTATGCTGCGCAACCCAGTGACCAGCACCAATGTGTTGGGCATGATGACCGCCATTCT
GGGTGTCTTCCTGTACAACAAGACCAAGTATGATGCGAATCAGCAGGCCCGGCGCCATCTTCTTCCCATC
TCCACGTCAGACCTGAGCAGCAGAGAGCACTTGCGGAGCCCAGTGGAAAAGCCCCACAATGGTGCATTGT
TCCCCCAGCAGGGTGACTTCCAGTACCGCAATATCCTCCTCACAGACCACTTCCAATACAGCCGCCAGGG
CCACCCAAACTCCTATGCTCTCAGCCGACATGATGTATAG

Translation (409 aa):
MAAAATAGPGAGAGVPGAGGGGGAREGARVAVLCLLWYALSAGGNVVNKVILSAFPFPVTVSLCHILALC
AGLPPLLRAWRVPPAPPVSGPGPGPHPASGPLLPPRFYPRYVLPLAFGKYFASVSAHVSIWKVPVSYAHT
VKATMPIWVVLLSRIIMKEKQSTKVYLSLVPIISGVLLATVTELSFDVWGLVSALAATLCFSLQNIFSKK
VLRDSRIHHLRLLNILGCHAVFFMIPTWVLVDLSTFLVSSDLAYVSQWPWTLLLLAVSGFCNFAQNVIAF
SILNLISPLSYSVANATKRIMVITVSLIMLRNPVTSTNVLGMMTAILGVFLYNKTKYDANQQARRHLLPI
STSDLSSREHLRSPVEKPHNGALFPQQGDFQYRNILLTDHFQYSRQGHPNSYALSRHDV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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