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Report for CCDS22315.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22315.1 Public Mus musculus 8 Hand2 23 108 98 CCDS HistoryNCBI Gene:15111Re-query CCDS DB by CCDS ID:22315.1Re-query CCDS DB by GeneID:15111See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22315.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000040104.4 ENSMUSP00000044983.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000040104.4Link to Ensembl Protein Viewer:ENSMUSP00000044983.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000040104Re-query CCDS DB by Protein ID:ENSMUSP00000044983
Original member Current member NCBI NM_010402.4 NP_034532.3 Accepted alive Link to Nucleotide Sequence:NM_010402.4Link to Protein Sequence:NP_034532.3Re-query CCDS DB by Nucleotide ID:NM_010402Re-query CCDS DB by Protein ID:NP_034532Link to BLAST:NP_034532.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034532.3 217 Q61039 217 100% 0 0

Chromosomal Locations for CCDS 22315.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 57321907 57322461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 57323762 57323860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (654 nt):
ATGAGTCTGGTGGGGGGCTTTCCCCACCACCCCGTGGTGCACCATGAGGGCTACCCATTCGCCGCAGCCG
CCGCCGCCGCTGCCGCCGCCGCCGCCAGCCGCTGCAGCCACGAGGAGAACCCCTACTTCCACGGCTGGCT
TATTGGCCACCCGGAGATGTCGCCCCCCGACTACAGTATGGCCCTGTCCTACAGCCCCGAGTACGCCAGC
GGTGCCGCGGGCCTGGACCACTCCCATTATGGGGGAGTGCCGCCCGGCGCCGGGCCTCCCGGCCTGGGGG
GGCCGCGCCCGGTGAAGCGCCGGGGCACCGCCAACCGCAAGGAGCGGCGCAGGACTCAGAGCATCAACAG
CGCCTTCGCCGAGCTGCGCGAGTGCATCCCCAACGTGCCCGCCGACACCAAACTCTCCAAGATCAAGACA
CTGCGCCTGGCCACCAGCTACATCGCCTACCTCATGGATCTGCTGGCCAAGGACGACCAGAACGGAGAGG
CGGAGGCCTTCAAGGCGGAGATCAAGAAGACCGACGTGAAAGAGGAGAAGAGGAAGAAAGAGCTGAATGA
GATCTTGAAAAGCACAGTGAGCAGCAACGACAAGAAAACCAAAGGCCGGACAGGCTGGCCACAGCACGTC
TGGGCCCTGGAGCTCAAGCAGTGA

Translation (217 aa):
MSLVGGFPHHPVVHHEGYPFAAAAAAAAAAAASRCSHEENPYFHGWLIGHPEMSPPDYSMALSYSPEYAS
GAAGLDHSHYGGVPPGAGPPGLGGPRPVKRRGTANRKERRRTQSINSAFAELRECIPNVPADTKLSKIKT
LRLATSYIAYLMDLLAKDDQNGEAEAFKAEIKKTDVKEEKRKKELNEILKSTVSSNDKKTKGRTGWPQHV
WALELKQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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