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Report for CCDS22216.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22216.1 Public Mus musculus 8 Chrnb3 23 108 98 CCDS HistoryNCBI Gene:108043Re-query CCDS DB by CCDS ID:22216.1Re-query CCDS DB by GeneID:108043See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22216.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000079463.11 ENSMUSP00000078428.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000079463.11Link to Ensembl Protein Viewer:ENSMUSP00000078428.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000079463Re-query CCDS DB by Protein ID:ENSMUSP00000078428
Original member Current member NCBI NM_027454.4 NP_081730.1 Accepted alive Link to Nucleotide Sequence:NM_027454.4Link to Protein Sequence:NP_081730.1Re-query CCDS DB by Nucleotide ID:NM_027454Re-query CCDS DB by Protein ID:NP_081730Link to BLAST:NP_081730.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081730.1 449 Q8BMN3-2 449 100% 0 0

Chromosomal Locations for CCDS 22216.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 27368969 27369017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 27385024 27385196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 27393300 27393409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 27393614 27394496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 27396660 27396794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1350 nt):
ATGACAGGCTTCCTACGGGTCTTCTTGGCTCTCAGTGCCACTCTCTCAGGTTCCTGGGTGACTCTCACAG
CCACTGCGGGACTCAGCTCAGTGGCTGAACATGAAGACGCACTCCTCAGACATTTGTTCCAAGGTTATCA
GAAATGTGTCCGCCCTGTGTTGAATTCCAGTGACATCATAAAAGTGTATTTTGGATTAAAGATATCTCAG
CTTGTAGATGTGGAATGGACAGACCAAAAATTACGATGGAATCCCGAAGACTATGGTGGAATTAATTCGA
TAAAGGTTCCATCGGAGTCGCTCTGGCTGCCTGACATAGTTCTCTTTGAAAATGCTGACGGACGTTTTGA
GGGCTCTCTCATGACCAAGGCCATTGTGAAATCCAGCGGAACCGTCAGTTGGACTCCTCCCGCCAGCTAC
AAAAGTTCCTGTACCATGGATGTCACATTTTTCCCGTTCGATAAGCAGAACTGCTCAATGAAGTTCGGAT
CCTGGACTTACGATGGTACCATGGTCGACCTCATTCTGATCAATGAAAACGTTGACCGGAAAGACTTTTT
TGATAACGGAGAGTGGGAGATACTAAATGCAAAGGGGATGAAGGGCAACAGAAGAGAAGGCTTTTACTCC
TATCCGTTTGTTACCTACTCTTTTGTTCTGAGACGCCTGCCCCTGTTTTACACCCTCTTTTTGATAATCC
CCTGCCTGGGGCTGTCTTTTCTCACGGTCCTGGTGTTCTACCTACCCTCCGACGAAGGGGAAAAACTCTC
CTTATCCACCTCGGTTTTGGTTTCTTTGACAGTGTTTCTTTTAGTAATCGAAGAAATAATCCCGTCTTCT
TCAAAAGTCATCCCTCTCATTGGGGAGTACCTCCTCTTCATTATGATATTTGTCACGCTGTCTATTATTG
TCACGGTTTTTGTAATTAATGTCCACCACAGATCTTCCTCAACGTACCATCCCATGGCCCCCTGGGTGAA
GAGGCTGTTTCTGGAAAAACTCCCGAGATGGCTTTGCATGAAGGACCCCAGGGACCGCTTCTCTTTCCCC
GATGGAACGGAGAGTAAGGGAACCGTGAGGGGGAAATTTCCAGGGAAAAAGAAGCAGACTCCTACCAGTG
ATGGAGAAAGAGTTCTGGTCGCTTTCCTGGAGAAGGCCTCTGAGTCCATCAGATACATCTCGAGGCATGT
GAAGAAGGAACACTTCATCAGTCAGGTTGTTCAAGACTGGAAATTCGTGGCTCAGGTTCTTGACCGCATC
TTCCTCTGGCTCTTTCTGACAGCTTCGGTTTTGGGCTCTGTCCTGATTTTTATTCCAGCCTTGAAGATGT
GGATACATCGTTTCCATTAG

Translation (449 aa):
MTGFLRVFLALSATLSGSWVTLTATAGLSSVAEHEDALLRHLFQGYQKCVRPVLNSSDIIKVYFGLKISQ
LVDVEWTDQKLRWNPEDYGGINSIKVPSESLWLPDIVLFENADGRFEGSLMTKAIVKSSGTVSWTPPASY
KSSCTMDVTFFPFDKQNCSMKFGSWTYDGTMVDLILINENVDRKDFFDNGEWEILNAKGMKGNRREGFYS
YPFVTYSFVLRRLPLFYTLFLIIPCLGLSFLTVLVFYLPSDEGEKLSLSTSVLVSLTVFLLVIEEIIPSS
SKVIPLIGEYLLFIMIFVTLSIIVTVFVINVHHRSSSTYHPMAPWVKRLFLEKLPRWLCMKDPRDRFSFP
DGTESKGTVRGKFPGKKKQTPTSDGERVLVAFLEKASESIRYISRHVKKEHFISQVVQDWKFVAQVLDRI
FLWLFLTASVLGSVLIFIPALKMWIHRFH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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