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Report for CCDS22212.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22212.1 Public Mus musculus 8 Got1l1 23 108 98 CCDS HistoryNCBI Gene:76615Re-query CCDS DB by CCDS ID:22212.1Re-query CCDS DB by GeneID:76615See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 22212.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000038174.7 ENSMUSP00000041337.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000038174.7Link to Ensembl Protein Viewer:ENSMUSP00000041337.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000038174Re-query CCDS DB by Protein ID:ENSMUSP00000041337
Original member Current member NCBI NM_029674.1 NP_083950.1 Accepted alive Link to Nucleotide Sequence:NM_029674.1Link to Protein Sequence:NP_083950.1Re-query CCDS DB by Nucleotide ID:NM_029674Re-query CCDS DB by Protein ID:NP_083950Link to BLAST:NP_083950.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083950.1 404 Q7TSV6-1 404 100% 0 0

Chromosomal Locations for CCDS 22212.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 27197539 27197681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 27197928 27198070 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 27198393 27198558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 27199267 27199417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 27199510 27199602 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 27199838 27199947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 27200233 27200344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 27200722 27200903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 27202372 27202486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1215 nt):
ATGACCAGTCTTTCTGTGTTCAGGGATGTACCCACAGCCCAGAAGCTAGAAGGCAGCTTACTAAAGATCT
ACAGGCAAGATGGCTATCCCAGCAAGTTGTTCCTGGCCTACAAAGTCTGCATGACCGAAGAAGGCCATCC
CTGGGTTTCTCTTGTGGTGCACAAGACCCGCCTGCAGATTGCAGAGGACCCCTCTCTGGACTATGAGTAC
TTGCCCCTGGTGGGCCTGAAATCATTCATCCAGTCTTCTCTGGAACTCCTCTTTGGAAAGCACAGCGAAG
CCATTGCGGAGAAAAGGGTTGGGGGTGTGCACATCGTTGGTGAGAGTGGAGCCTTCCAGCTTGGGGCTCA
GTTCCTCAAGACGTGGCGAAAGAATGTGAAAATCGTTTGTATCGTCTCATGTCAAAAAGAACAGTGTGGA
CTCATCTTCCAGGACATGGGCTTTATAGTTTATGAGTACTCTATCTGGAACGCCAGTGATCTCTGCTCAG
ACCCCAGCATGTTCGTGGAAGTACTCCAGCATATCCCGGTCGGCAGCATCCTTGTGATTGGGAACATCAC
TGATTGCAAGTTCACACAGAATCAGTGGACGAAACTGATGTCCATCATTAAGAGCAAGCAGATATTCCCA
TTCTTTGACATTCCCTGTCAAGGTTTATCCACTGGTGACCTCGAGGAAGATACCAAAATCTTACAGTACT
TTGTGTCCCTAGGCTTGGAGTTCTTCTGCAGCCAATCTCTGTCCAAGAATTTTGGCATTTATGATGAAGG
AGTGGGGATCCTAGTAGTGGCTGCCCTCAGCAACCAGCACCTGCTGTGTGTCCTCTCCCAGCTGATGGAT
TATGTCCAGGCCCTGTGGGGAAACCCTCCTGCCACGGGTGCTCGGATAATCACCTCCATCCTCTGCAACC
CTGCTCTGTTTGGAGAATGGAAGCAGAGTCTCAAAGGTGTGGTGGAGAACATGATGCTGATCAAGGAGAA
AGTGAAGGAGAAGCTGCGGCTCCTAGGGACCCCTGGGTCGTGGGATCACATCACCCGACAGAGCGGGACC
CATGGTTATCTGGGACTCACCTATCAACAGGTGGAGTTTCTGGTCAAGAAGAAACATATCTACTTGCCCA
AAACTAGCCGGATCAACTTCACCTGCATCAATGCCAGGAATATAGACTACATCACTCAGAGCATCCATGA
GGCCGTGATGCTAACAGAGGGCTGA

Translation (404 aa):
MTSLSVFRDVPTAQKLEGSLLKIYRQDGYPSKLFLAYKVCMTEEGHPWVSLVVHKTRLQIAEDPSLDYEY
LPLVGLKSFIQSSLELLFGKHSEAIAEKRVGGVHIVGESGAFQLGAQFLKTWRKNVKIVCIVSCQKEQCG
LIFQDMGFIVYEYSIWNASDLCSDPSMFVEVLQHIPVGSILVIGNITDCKFTQNQWTKLMSIIKSKQIFP
FFDIPCQGLSTGDLEEDTKILQYFVSLGLEFFCSQSLSKNFGIYDEGVGILVVAALSNQHLLCVLSQLMD
YVQALWGNPPATGARIITSILCNPALFGEWKQSLKGVVENMMLIKEKVKEKLRLLGTPGSWDHITRQSGT
HGYLGLTYQQVEFLVKKKHIYLPKTSRINFTCINARNIDYITQSIHEAVMLTEG


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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