NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS22184.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22184.1 Public Mus musculus 8 Ap3m2 23 108 98 CCDS HistoryNCBI Gene:64933Re-query CCDS DB by CCDS ID:22184.1Re-query CCDS DB by GeneID:64933See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22184.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000163739.2 ENSMUSP00000128446.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000163739.2Link to Ensembl Protein Viewer:ENSMUSP00000128446.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000163739Re-query CCDS DB by Protein ID:ENSMUSP00000128446
Original member Current member EBI ENSMUST00000210656.1 ENSMUSP00000147967.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000210656.1Link to Ensembl Protein Viewer:ENSMUSP00000147967.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000210656Re-query CCDS DB by Protein ID:ENSMUSP00000147967
Original member Current member NCBI NM_001122820.1 NP_001116292.1 Accepted alive Link to Nucleotide Sequence:NM_001122820.1Link to Protein Sequence:NP_001116292.1Re-query CCDS DB by Nucleotide ID:NM_001122820Re-query CCDS DB by Protein ID:NP_001116292Link to BLAST:NP_001116292.1
Original member Current member NCBI NM_029505.3 NP_083781.2 Accepted alive Link to Nucleotide Sequence:NM_029505.3Link to Protein Sequence:NP_083781.2Re-query CCDS DB by Nucleotide ID:NM_029505Re-query CCDS DB by Protein ID:NP_083781Link to BLAST:NP_083781.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001116292.1 418 Q8R2R9 418 100% 0 0
NP_083781.2 418 Q8R2R9 418 100% 0 0

Chromosomal Locations for CCDS 22184.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 22789353 22789453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22790881 22791025 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22791245 22791452 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22792718 22792851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22793066 22793151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22797082 22797219 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22799641 22799812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22803760 22804032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1257 nt):
ATGATTCACAGCCTTTTCTTGATTAACTCTTCCGGAGATATTTTCCTGGAGAAACACTGGAAAAGTGTGG
TCAGCCGCTCTGTGTGTGATTACTTCTTCGAGGCCCAAGAGAGAGCTACCGAGGCAGAAAATGTGCCTCC
GGTCATCCCCACCCCTCACCACTACCTCCTGAGTGTTTACCGGCACAAGATCTTCTTTGTGGCTGTAATC
CAGACAGAGGTCCCGCCTCTGTTTGTCATTGAATTCCTTCACCGAGTAGTGGATACATTTCAGGACTATT
TTGGGGTCTGTTCCGAGCCAGTGATCAAAGACAATGTGGTGGTGGTGTACGAGGTGTTGGAAGAGATGCT
GGACAACGGGTTCCCCTTGGCTACGGAGTCAAACATCCTCAAAGAACTGATAAAGCCTCCCACTATTCTC
CGGACAGTGGTCAACACCATCACAGGAAGCACCAATGTGGGGGACCAGCTTCCAACTGGGCAGCTGTCGG
TGGTGCCTTGGCGACGGACAGGGGTGAAATATACCAACAACGAGGCCTATTTCGATGTGGTGGAAGAGAT
AGACGCCATCATTGACAAGTCAGGTTCCACAGTCACCGCTGAGATCCAAGGGGTGATCGATGCCTGTGTT
AAGCTGACCGGGATGCCGGATCTCACTCTGTCCTTCATGAACCCCAGGTTGCTGGACGATGTTAGCTTCC
ACCCCTGTGTCCGTTTCAAGCGCTGGGAATCTGAGCGCATCCTCTCCTTCATCCCTCCTGACGGCAACTT
CCGCCTGCTCGCCTACCACGTCAGTGCACAGAACCTCGTTGCCATTCCAGTCTATGTCAAACATAGCATC
AGCTTCCGGGACAGCAGTTCACTTGGACGCTTTGAAATCACGGTGGGACCCAAGCAGACCATGGGGAAGA
CCATAGAGGGTGTGATTGTCACCAGCCAGATGCCCAAAGGAGTCCTGAATATGAGCCTCACTCCATCTCA
GGGGACACACACGTTTGACCCCGTGACAAAGATGCTGTCTTGGGATGTAGGAAAAATAAACCCACAGAAG
CTGCCAAGTTTGAAGGGGACGATGGGTCTCCAGGTCGGAGCTTCTAAACCAGATGAGAACCCTACGATTA
ACCTGCAGTTTAAGATCCAGCAGCTGGCCATTTCTGGACTCAAAGTGAACCGTCTGGATATGTACGGGGA
GAAGTACAAGCCCTTTAAAGGCATCAAATACATGACCAAAGCCGGCAAGTTCCAAGTCCGAACCTGA

Translation (418 aa):
MIHSLFLINSSGDIFLEKHWKSVVSRSVCDYFFEAQERATEAENVPPVIPTPHHYLLSVYRHKIFFVAVI
QTEVPPLFVIEFLHRVVDTFQDYFGVCSEPVIKDNVVVVYEVLEEMLDNGFPLATESNILKELIKPPTIL
RTVVNTITGSTNVGDQLPTGQLSVVPWRRTGVKYTNNEAYFDVVEEIDAIIDKSGSTVTAEIQGVIDACV
KLTGMPDLTLSFMNPRLLDDVSFHPCVRFKRWESERILSFIPPDGNFRLLAYHVSAQNLVAIPVYVKHSI
SFRDSSSLGRFEITVGPKQTMGKTIEGVIVTSQMPKGVLNMSLTPSQGTHTFDPVTKMLSWDVGKINPQK
LPSLKGTMGLQVGASKPDENPTINLQFKIQQLAISGLKVNRLDMYGEKYKPFKGIKYMTKAGKFQVRT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH