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Report for CCDS22181.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22181.1 Public Mus musculus 8 Polb 23 108 98 CCDS HistoryNCBI Gene:18970Re-query CCDS DB by CCDS ID:22181.1Re-query CCDS DB by GeneID:18970See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22181.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000033938.6 ENSMUSP00000033938.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000033938.6Link to Ensembl Protein Viewer:ENSMUSP00000033938.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000033938Re-query CCDS DB by Protein ID:ENSMUSP00000033938
Original member Current member NCBI NM_011130.2 NP_035260.1 Accepted alive Link to Nucleotide Sequence:NM_011130.2Link to Protein Sequence:NP_035260.1Re-query CCDS DB by Nucleotide ID:NM_011130Re-query CCDS DB by Protein ID:NP_035260Link to BLAST:NP_035260.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035260.1 335 Q8K409 335 100% 0 0

Chromosomal Locations for CCDS 22181.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 22628275 22628369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22630343 22630482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22631455 22631519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22637068 22637154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22639934 22640004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22640359 22640431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22640513 22640567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22642305 22642356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22645045 22645094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22647413 22647471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22648182 22648256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22650489 22650555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22653060 22653117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22653314 22653374 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1008 nt):
ATGAGCAAACGCAAGGCGCCGCAGGAGACCCTCAACGGCGGCATCACGGACATGCTCGTGGAACTCGCAA
ACTTTGAGAAGAACGTGAGCCAGGCGATCCACAAGTACAATGCGTACAGAAAAGCGGCATCTGTGATAGC
CAAGTACCCACACAAAATCAAGAGCGGAGCGGAAGCTAAGAAACTGCCAGGAGTAGGAACAAAAATTGCT
GAAAAGATTGATGAATTTTTAGCAACTGGAAAATTGCGTAAACTGGAAAAGATTCGTCAAGATGATACAA
GTTCATCCATCAATTTCCTGACTCGAGTTACTGGCATTGGACCATCTGCTGCAAGGAAGTTTGTAGATGA
AGGAATTAAGACATTAGAAGATCTCAGGAAAAATGAAGATAAACTGAACCATCATCAACGAATTGGGCTG
AAATATTTCGAGGACTTTGAAAAGAGAATTCCTCGTGAGGAAATGCTGCAGATGCAGGATATTGTACTTA
ATGAAATTAAAAAAGTGGACTCTGAGTACATTGCTACAGTCTGTGGCAGTTTCAGAAGAGGCGCAGAGTC
GAGTGGAGACATGGATGTCCTGCTGACCCACCCAAACTTCACGTCAGAATCCAGCAAACAGCCAAAGTTG
TTACATCGTGTTGTGGAACAGTTACAAAAAGTCCATTTCATTACAGATACTCTGTCAAAGGGTGAAACAA
AGTTCATGGGTGTTTGCCAGCTTCCCAGCGAGAAGGATGGAAAGGAATATCCACACAGGAGAATCGATAT
CAGGTTGATCCCCAAAGATCAGTACTACTGTGGTGTTCTCTACTTCACTGGGAGTGACATCTTTAATAAG
AACATGAGAGCGCACGCCCTGGAAAAGGGCTTCACAATCAATGAGTACACCATCCGCCCCCTGGGGGTCA
CTGGAGTCGCTGGGGAGCCCCTTCCTGTGGACAGTGAGCAGGACATTTTTGATTACATCCAGTGGCGCTA
CCGGGAGCCCAAGGATAGAAGTGAATGA

Translation (335 aa):
MSKRKAPQETLNGGITDMLVELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA
EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVTGIGPSAARKFVDEGIKTLEDLRKNEDKLNHHQRIGL
KYFEDFEKRIPREEMLQMQDIVLNEIKKVDSEYIATVCGSFRRGAESSGDMDVLLTHPNFTSESSKQPKL
LHRVVEQLQKVHFITDTLSKGETKFMGVCQLPSEKDGKEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNK
NMRAHALEKGFTINEYTIRPLGVTGVAGEPLPVDSEQDIFDYIQWRYREPKDRSE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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