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Report for CCDS2208.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2208.1 Public Homo sapiens 2 WDSUB1 24 110 108 CCDS HistoryNCBI Gene:151525Re-query CCDS DB by CCDS ID:2208.1Re-query CCDS DB by GeneID:151525See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2208.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000359774.9 ENSP00000352820.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000359774.9Link to Ensembl Protein Viewer:ENSP00000352820.4Re-query CCDS DB by Nucleotide ID:ENST00000359774Re-query CCDS DB by Protein ID:ENSP00000352820
Original member Current member EBI ENST00000392796.7 ENSP00000376545.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000392796.7Link to Ensembl Protein Viewer:ENSP00000376545.3Re-query CCDS DB by Nucleotide ID:ENST00000392796Re-query CCDS DB by Protein ID:ENSP00000376545
Original member Current member EBI ENST00000409990.7 ENSP00000387078.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000409990.7Link to Ensembl Protein Viewer:ENSP00000387078.3Re-query CCDS DB by Nucleotide ID:ENST00000409990Re-query CCDS DB by Protein ID:ENSP00000387078
Original member Current member NCBI NM_001128212.3 NP_001121684.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001128212.3Link to Protein Sequence:NP_001121684.1Re-query CCDS DB by Nucleotide ID:NM_001128212Re-query CCDS DB by Protein ID:NP_001121684Link to BLAST:NP_001121684.1
Original member Current member NCBI NM_001128213.2 NP_001121685.1 Accepted alive Link to Nucleotide Sequence:NM_001128213.2Link to Protein Sequence:NP_001121685.1Re-query CCDS DB by Nucleotide ID:NM_001128213Re-query CCDS DB by Protein ID:NP_001121685Link to BLAST:NP_001121685.1
Original member Current member NCBI NM_001330278.2 NP_001317207.1 Accepted alive Link to Nucleotide Sequence:NM_001330278.2Link to Protein Sequence:NP_001317207.1Re-query CCDS DB by Nucleotide ID:NM_001330278Re-query CCDS DB by Protein ID:NP_001317207Link to BLAST:NP_001317207.1
Original member Current member NCBI NM_152528.3 NP_689741.2 Accepted alive Link to Nucleotide Sequence:NM_152528.3Link to Protein Sequence:NP_689741.2Re-query CCDS DB by Nucleotide ID:NM_152528Re-query CCDS DB by Protein ID:NP_689741Link to BLAST:NP_689741.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001121684.1 476 Q8N9V3-1 476 100% 0 0
NP_001121685.1 476 Q8N9V3-1 476 100% 0 0
NP_001317207.1 476 Q8N9V3-1 476 100% 0 0
NP_689741.2 476 Q8N9V3-1 476 100% 0 0

Chromosomal Locations for CCDS 2208.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 159236033 159236190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 159248372 159248512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 159256196 159256375 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 159257758 159257864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 159257945 159257985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 159259810 159259843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 159271702 159271795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 159275546 159275638 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 159279761 159279945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 159282672 159283069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1431 nt):
ATGGTGAAACTGATTCACACATTAGCTGATCATGGTGACGATGTCAACTGCTGTGCCTTCTCCTTTTCCC
TCTTGGCTACTTGCTCCTTGGACAAAACAATTCGCCTGTACTCGTTACGTGACTTTACTGAACTGCCACA
TTCTCCATTGAAGTTTCATACCTATGCTGTCCACTGCTGCTGTTTCTCCCCTTCAGGACATATTTTGGCA
TCGTGTTCAACAGATGGTACCACTGTCCTATGGAATACTGAAAATGGACAGATGCTGGCAGTGATGGAAC
AGCCTAGTGGCAGCCCTGTGAGGGTTTGCCAGTTTTCCCCAGACTCCACGTGTTTGGCATCAGGGGCAGC
TGATGGAACTGTGGTTTTGTGGAATGCACAGTCATACAAATTATATAGATGTGGTAGTGTTAAAGATGGC
TCCTTGGCGGCATGTGCATTTTCTCCTAATGGAAGCTTCTTTGTCACTGGCTCCTCATGTGGTGATTTAA
CAGTGTGGGATGATAAAATGAGGTGTCTGCATAGTGAAAAAGCACATGATCTTGGAATTACCTGCTGCGA
TTTTTCTTCACAGCCAGTTTCTGATGGAGAACAAGGTCTTCAGTTTTTTCGACTGGCATCATGTGGTCAG
GATTGCCAAGTCAAAATTTGGATTGTTTCTTTTACCCATATCTTAGGTTTTGAATTAAAATATAAAAGTA
CACTGAGTGGGCACTGTGCTCCTGTTCTGGCTTGTGCTTTTTCCCATGATGGGCAGATGCTAGTCTCAGG
GTCAGTGGATAAGTCTGTCATAGTATATGATACTAATACTGAGAATATACTTCACACATTGACTCAGCAC
ACCAGGTATGTCACAACTTGTGCTTTTGCACCTAATACCCTTTTACTTGCTACTGGTTCAATGGACAAAA
CAGTGAACATCTGGCAATTTGACCTGGAAACACTTTGCCAAGCAAGGCGCACAGAACATCAGCTGAAGCA
ATTTACCGAAGATTGGTCAGAGGAGGATGTCTCAACATGGCTTTGTGCACAAGATTTAAAAGATCTTGTT
GGTATTTTCAAGATGAATAACATTGATGGAAAAGAACTGTTGAATCTTACAAAAGAAAGTCTGGCTGATG
ATTTGAAAATTGAATCTCTAGGACTGCGTAGTAAAGTGCTGAGGAAAATTGAAGAGCTCAGGACCAAGGT
TAAATCCCTTTCTTCAGGAATTCCTGATGAATTTATATGTCCAATAACTAGAGAACTTATGAAAGATCCG
GTCATCGCATCAGATGGCTATTCATATGAAAAGGAAGCAATGGAAAATTGGATCAGCAAAAAGAAACGTA
CAAGTCCCATGACAAATCTTGTTCTTCCTTCAGCGGTACTTACACCAAATAGGACTCTGAAAATGGCCAT
CAATAGATGGCTGGAGACACACCAAAAGTAA

Translation (476 aa):
MVKLIHTLADHGDDVNCCAFSFSLLATCSLDKTIRLYSLRDFTELPHSPLKFHTYAVHCCCFSPSGHILA
SCSTDGTTVLWNTENGQMLAVMEQPSGSPVRVCQFSPDSTCLASGAADGTVVLWNAQSYKLYRCGSVKDG
SLAACAFSPNGSFFVTGSSCGDLTVWDDKMRCLHSEKAHDLGITCCDFSSQPVSDGEQGLQFFRLASCGQ
DCQVKIWIVSFTHILGFELKYKSTLSGHCAPVLACAFSHDGQMLVSGSVDKSVIVYDTNTENILHTLTQH
TRYVTTCAFAPNTLLLATGSMDKTVNIWQFDLETLCQARRTEHQLKQFTEDWSEEDVSTWLCAQDLKDLV
GIFKMNNIDGKELLNLTKESLADDLKIESLGLRSKVLRKIEELRTKVKSLSSGIPDEFICPITRELMKDP
VIASDGYSYEKEAMENWISKKKRTSPMTNLVLPSAVLTPNRTLKMAINRWLETHQK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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