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Report for CCDS22066.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22066.1 Public Mus musculus 8 Pcp2 23 108 98 CCDS HistoryNCBI Gene:18545Re-query CCDS DB by CCDS ID:22066.1Re-query CCDS DB by GeneID:18545See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 22066.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000004749.6 ENSMUSP00000004749.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000004749.6Link to Ensembl Protein Viewer:ENSMUSP00000004749.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000004749Re-query CCDS DB by Protein ID:ENSMUSP00000004749
Original member Current member EBI ENSMUST00000142431.7 ENSMUSP00000121403.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000142431.7Link to Ensembl Protein Viewer:ENSMUSP00000121403.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000142431Re-query CCDS DB by Protein ID:ENSMUSP00000121403
Current member NCBI NM_001372449.1 NP_001359378.1 Accepted alive Link to Nucleotide Sequence:NM_001372449.1Link to Protein Sequence:NP_001359378.1Re-query CCDS DB by Nucleotide ID:NM_001372449Re-query CCDS DB by Protein ID:NP_001359378Link to BLAST:NP_001359378.1
Original member NCBI NM_008790.2 NP_032816.1 Updated not alive Link to Nucleotide Sequence:NM_008790.2Link to Protein Sequence:NP_032816.1Re-query CCDS DB by Nucleotide ID:NM_008790Re-query CCDS DB by Protein ID:NP_032816
Current member NCBI NM_008790.3 NP_032816.1 Accepted alive Link to Nucleotide Sequence:NM_008790.3Link to Protein Sequence:NP_032816.1Re-query CCDS DB by Nucleotide ID:NM_008790Re-query CCDS DB by Protein ID:NP_032816Link to BLAST:NP_032816.1

Chromosomal Locations for CCDS 22066.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 3623439 3623558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3624508 3624632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 3624786 3624840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (300 nt):
ATGGAGGAGCAGCGCTGTTCCTTGCAGGCTGGGCCAGGCCAGAACCCAGAAAGCCAGGGTGGCCCTGCTC
CAGAGATGGACAATCTCATGGATATGCTGGTCAACACCCAGGGCCGCCGCATGGACGACCAGCGTGTAAC
AGTTAATTCCCTGCCTGGCTTCCAACCTATCGGCCCCAAGGATGGAATGCAGAAACGACCTGGGACCCTC
AGCCCTCAACCCCTGCTCACCCCTCAGGATCCTGCTGCACTCAGCTTCCGCAGGAACAGCAGCCCCCAGC
CCCAGACACAAGCTCCTTGA

Translation (99 aa):
MEEQRCSLQAGPGQNPESQGGPAPEMDNLMDMLVNTQGRRMDDQRVTVNSLPGFQPIGPKDGMQKRPGTL
SPQPLLTPQDPAALSFRRNSSPQPQTQAP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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