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Report for CCDS2199.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2199.1 Public Homo sapiens 2 GALNT13 24 110 108 CCDS HistoryNCBI Gene:114805Re-query CCDS DB by CCDS ID:2199.1Re-query CCDS DB by GeneID:114805See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2199.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000392825.8 ENSP00000376570.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000392825.8Link to Ensembl Protein Viewer:ENSP00000376570.3Re-query CCDS DB by Nucleotide ID:ENST00000392825Re-query CCDS DB by Protein ID:ENSP00000376570
Original member Current member NCBI NM_001376392.1 NP_001363321.1 Accepted alive Link to Nucleotide Sequence:NM_001376392.1Link to Protein Sequence:NP_001363321.1Re-query CCDS DB by Nucleotide ID:NM_001376392Re-query CCDS DB by Protein ID:NP_001363321Link to BLAST:NP_001363321.1
Original member Current member NCBI NM_001376394.1 NP_001363323.1 Accepted alive Link to Nucleotide Sequence:NM_001376394.1Link to Protein Sequence:NP_001363323.1Re-query CCDS DB by Nucleotide ID:NM_001376394Re-query CCDS DB by Protein ID:NP_001363323Link to BLAST:NP_001363323.1
Original member Current member NCBI NM_001376398.1 NP_001363327.1 Accepted alive Link to Nucleotide Sequence:NM_001376398.1Link to Protein Sequence:NP_001363327.1Re-query CCDS DB by Nucleotide ID:NM_001376398Re-query CCDS DB by Protein ID:NP_001363327Link to BLAST:NP_001363327.1
Original member Current member NCBI NM_001376400.1 NP_001363329.1 Accepted alive Link to Nucleotide Sequence:NM_001376400.1Link to Protein Sequence:NP_001363329.1Re-query CCDS DB by Nucleotide ID:NM_001376400Re-query CCDS DB by Protein ID:NP_001363329Link to BLAST:NP_001363329.1
Original member Current member NCBI NM_001376401.1 NP_001363330.1 Accepted alive Link to Nucleotide Sequence:NM_001376401.1Link to Protein Sequence:NP_001363330.1Re-query CCDS DB by Nucleotide ID:NM_001376401Re-query CCDS DB by Protein ID:NP_001363330Link to BLAST:NP_001363330.1
Original member Current member NCBI NM_001376402.1 NP_001363331.1 Accepted alive Link to Nucleotide Sequence:NM_001376402.1Link to Protein Sequence:NP_001363331.1Re-query CCDS DB by Nucleotide ID:NM_001376402Re-query CCDS DB by Protein ID:NP_001363331Link to BLAST:NP_001363331.1
Original member Current member NCBI NM_052917.4 NP_443149.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_052917.4Link to Protein Sequence:NP_443149.2Re-query CCDS DB by Nucleotide ID:NM_052917Re-query CCDS DB by Protein ID:NP_443149Link to BLAST:NP_443149.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001363321.1 556 Q8IUC8-1 556 100% 0 0
NP_001363323.1 556 Q8IUC8-1 556 100% 0 0
NP_001363327.1 556 Q8IUC8-1 556 100% 0 0
NP_001363329.1 556 Q8IUC8-1 556 100% 0 0
NP_001363330.1 556 Q8IUC8-1 556 100% 0 0
NP_001363331.1 556 Q8IUC8-1 556 100% 0 0
NP_443149.2 556 Q8IUC8-1 556 100% 0 0

Chromosomal Locations for CCDS 2199.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 153944498 153944639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 154140337 154140505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 154242030 154242196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 154242698 154242905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 154245812 154245982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 154259021 154259138 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 154301409 154301589 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 154395991 154396130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 154408984 154409082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 154438592 154438726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 154450411 154450551 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1671 nt):
ATGAGGAGATTTGTCTACTGCAAGGTGGTTCTAGCCACTTCGCTGATGTGGGTTCTTGTTGATGTCTTCT
TACTGCTGTACTTCAGTGAATGTAACAAATGTGATGACAAGAAGGAGAGATCTCTGCTGCCTGCATTGAG
GGCTGTTATTTCAAGAAACCAAGAAGGGCCAGGAGAAATGGGAAAAGCTGTGTTGATTCCTAAAGATGAC
CAGGAGAAAATGAAAGAGCTGTTTAAAATCAATCAGTTTAACCTTATGGCCAGTGATTTGATTGCCCTTA
ATAGAAGTCTGCCAGATGTAAGATTAGAAGGATGTAAGACAAAAGTCTACCCTGATGAACTTCCAAACAC
AAGTGTAGTCATTGTGTTTCATAATGAAGCTTGGAGCACTCTCCTTAGAACTGTTTACAGTGTGATAAAT
CGTTCCCCACACTATCTACTCTCAGAGGTCATCTTGGTAGATGATGCCAGTGAAAGAGATTTTCTCAAGT
TGACATTAGAGAATTACGTGAAAAATTTAGAAGTGCCAGTAAAAATTATTAGGATGGAAGAACGCTCTGG
GTTAATACGTGCCCGTCTTCGAGGAGCAGCTGCTTCAAAAGGGCAGGTCATAACTTTTCTTGATGCACAC
TGTGAATGCACGTTAGGATGGCTGGAGCCTTTGCTGGCAAGAATAAAGGAAGACAGGAAAACGGTTGTCT
GCCCTATCATTGATGTGATTAGTGATGATACTTTTGAATATATGGCTGGGTCAGACATGACTTATGGGGG
TTTTAACTGGAAACTGAATTTCCGCTGGTATCCTGTTCCCCAAAGAGAAATGGACAGGAGGAAAGGAGAC
AGAACATTACCTGTCAGGACCCCTACTATGGCTGGTGGCCTATTTTCTATTGACAGAAACTACTTTGAAG
AGATAGGAACTTACGATGCAGGAATGGATATCTGGGGTGGAGAGAATCTTGAAATGTCTTTTAGGATTTG
GCAATGTGGAGGCTCCTTGGAGATTGTTACTTGCTCCCATGTTGGTCATGTTTTTCGGAAGGCAACTCCA
TACACTTTTCCTGGTGGCACTGGTCATGTCATCAACAAGAACAACAGGAGACTGGCAGAAGTTTGGATGG
ATGAATTTAAAGATTTCTTCTACATCATATCCCCAGGTGTTGTCAAAGTGGATTATGGAGATGTGTCAGT
CAGAAAAACACTAAGAGAAAATCTGAAGTGTAAGCCCTTTTCTTGGTACCTAGAAAACATCTATCCGGAC
TCCCAGATCCCAAGACGTTATTACTCACTTGGTGAGATAAGAAATGTTGAAACCAATCAGTGTTTAGACA
ACATGGGCCGCAAGGAAAATGAAAAAGTGGGTATATTCAACTGTCATGGTATGGGAGGAAATCAGGTATT
TTCTTACACTGCTGACAAAGAAATCCGAACCGATGACTTGTGCTTGGATGTTTCTAGACTCAATGGACCT
GTAATCATGTTAAAATGCCACCATATGAGAGGAAATCAGTTATGGGAATATGATGCTGAGAGACTCACGT
TGCGACATGTTAACAGTAACCAATGTCTCGATGAACCTTCTGAAGAAGACAAAATGGTGCCTACAATGCA
GGACTGTAGTGGAAGCAGATCCCAACAGTGGCTGCTAAGGAACATGACCTTGGGCACATGA

Translation (556 aa):
MRRFVYCKVVLATSLMWVLVDVFLLLYFSECNKCDDKKERSLLPALRAVISRNQEGPGEMGKAVLIPKDD
QEKMKELFKINQFNLMASDLIALNRSLPDVRLEGCKTKVYPDELPNTSVVIVFHNEAWSTLLRTVYSVIN
RSPHYLLSEVILVDDASERDFLKLTLENYVKNLEVPVKIIRMEERSGLIRARLRGAAASKGQVITFLDAH
CECTLGWLEPLLARIKEDRKTVVCPIIDVISDDTFEYMAGSDMTYGGFNWKLNFRWYPVPQREMDRRKGD
RTLPVRTPTMAGGLFSIDRNYFEEIGTYDAGMDIWGGENLEMSFRIWQCGGSLEIVTCSHVGHVFRKATP
YTFPGGTGHVINKNNRRLAEVWMDEFKDFFYIISPGVVKVDYGDVSVRKTLRENLKCKPFSWYLENIYPD
SQIPRRYYSLGEIRNVETNQCLDNMGRKENEKVGIFNCHGMGGNQVFSYTADKEIRTDDLCLDVSRLNGP
VIMLKCHHMRGNQLWEYDAERLTLRHVNSNQCLDEPSEEDKMVPTMQDCSGSRSQQWLLRNMTLGT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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