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Report for CCDS21977.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21977.1 Public Mus musculus 7 Or12j4 23 108 98 CCDS HistoryNCBI Gene:258056Re-query CCDS DB by CCDS ID:21977.1Re-query CCDS DB by GeneID:258056See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 21977.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000071755.4 ENSMUSP00000071667.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000071755.4Link to Ensembl Protein Viewer:ENSMUSP00000071667.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000071755Re-query CCDS DB by Protein ID:ENSMUSP00000071667
Original member Current member EBI ENSMUST00000211093.2 ENSMUSP00000148260.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000211093.2Link to Ensembl Protein Viewer:ENSMUSP00000148260.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000211093Re-query CCDS DB by Protein ID:ENSMUSP00000148260
Original member Current member EBI ENSMUST00000216258.1 ENSMUSP00000149238.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000216258.1Link to Ensembl Protein Viewer:ENSMUSP00000149238.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000216258Re-query CCDS DB by Protein ID:ENSMUSP00000149238
Original member Current member EBI ENSMUST00000215308.1 ENSMUSP00000150552.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000215308.1Link to Ensembl Protein Viewer:ENSMUSP00000150552.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000215308Re-query CCDS DB by Protein ID:ENSMUSP00000150552
Original member Current member EBI ENSMUST00000217179.1 ENSMUSP00000150653.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000217179.1Link to Ensembl Protein Viewer:ENSMUSP00000150653.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000217179Re-query CCDS DB by Protein ID:ENSMUSP00000150653
Original member Current member NCBI NM_001011815.1 NP_001011815.1 Accepted alive Link to Nucleotide Sequence:NM_001011815.1Link to Protein Sequence:NP_001011815.1Re-query CCDS DB by Nucleotide ID:NM_001011815Re-query CCDS DB by Protein ID:NP_001011815Link to BLAST:NP_001011815.1

Chromosomal Locations for CCDS 21977.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 140466203 140467165 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (963 nt):
ATGGCTCCAGTAAACCAGTCAGTTGTGACCATGTTCATCCTGCAAAGGTTTGTTGATGACCCCAGGGTCC
AGGATGTTCTCTTCTGCCTCTTCTTTGCCTTGTTCGTGGCAGCCATAGCTGGCAATGGCCTGATCATCGC
GACCATTCACAGCAGTCCCAACCTCCACACTCCCATGTACTTCTTCCTAGTCAACCTTGCCCTGATGGAT
GTGATCTGCACTGTGACTGTCTTGCCTAAAGTTCTGCAGAGCCTGGTGGCAGAGAACAGCATATCTTATG
GGGGATGCCTCACACAGATGTTCGTCTTCTCCTGGGTCCTGGGCTCTGAGCTTCTGCTTTTCTCTGCCAT
GGCCTATGACCGCTACCTTGCAATCTGTCGGCCACTGCACTATGGCACCCTCATGAGTGGCAGGGTCTGT
GTGGCCCTTGCAACCTTTGTGTGGTTCACTGGAGCTTTCAATTCATTGGTGCTCACTTGTCTGATGTTGC
CATTGTCTTTCTGTGGTCCCAATCTCATCACACACTTCTTCTGTGAGATCCCTTCTGTGTTGATACTGTC
CTGTAGTCCCACCTTTATCAATGACATCATGACTGTCATTGCAGACATGTTCCTGACAGGCCTGAACTTT
TTATTGACAATGACATCCTATGGCTTCATCATTTCCAGCATCCTGCGCATCCGCTCAGCTGAGGGCAAGA
AGCGTGCCTTCTCTACCTGCTCTGCCCACCTGGTTGTGGTCACACTTTATTATTCCACAGTTCTTTATAC
TTATGTCCGGCCAGCCCTAGGAACTGCTGGGTTCCTGGACAAACTCATTGCTGTTCTGTATACCACTGTG
ACCCCATCTCTGAACCCCCTTATCTATACTCTGAGAAACAAGGAATTCAAAACATCCTTTAAAAAACTCA
TTTCCCTCTTGAGAACTTTGAGCTTGGAGATGAACTCTAAAAGCAATGGGTAA

Translation (320 aa):
MAPVNQSVVTMFILQRFVDDPRVQDVLFCLFFALFVAAIAGNGLIIATIHSSPNLHTPMYFFLVNLALMD
VICTVTVLPKVLQSLVAENSISYGGCLTQMFVFSWVLGSELLLFSAMAYDRYLAICRPLHYGTLMSGRVC
VALATFVWFTGAFNSLVLTCLMLPLSFCGPNLITHFFCEIPSVLILSCSPTFINDIMTVIADMFLTGLNF
LLTMTSYGFIISSILRIRSAEGKKRAFSTCSAHLVVVTLYYSTVLYTYVRPALGTAGFLDKLIAVLYTTV
TPSLNPLIYTLRNKEFKTSFKKLISLLRTLSLEMNSKSNG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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