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Report for CCDS21870.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21870.1 Public Mus musculus 7 Cfap119 23 108 98 CCDS HistoryNCBI Gene:233899Re-query CCDS DB by CCDS ID:21870.1Re-query CCDS DB by GeneID:233899See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21870.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000072155.4 ENSMUSP00000072019.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000072155.4Link to Ensembl Protein Viewer:ENSMUSP00000072019.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000072155Re-query CCDS DB by Protein ID:ENSMUSP00000072019
Original member NCBI NM_001033040.3 NP_001028212.1 Updated not alive Link to Nucleotide Sequence:NM_001033040.3Link to Protein Sequence:NP_001028212.1Re-query CCDS DB by Nucleotide ID:NM_001033040Re-query CCDS DB by Protein ID:NP_001028212
Current member NCBI NM_001033040.4 NP_001028212.1 Accepted alive Link to Nucleotide Sequence:NM_001033040.4Link to Protein Sequence:NP_001028212.1Re-query CCDS DB by Nucleotide ID:NM_001033040Re-query CCDS DB by Protein ID:NP_001028212Link to BLAST:NP_001028212.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001028212.1 333 Q6NZQ0 333 100% 0 0

Chromosomal Locations for CCDS 21870.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 127583411 127583589 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 127584821 127584913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 127584993 127585053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 127585145 127585261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 127585454 127585524 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 127586275 127586444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 127586823 127586888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 127587564 127587595 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 127587877 127588089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1002 nt):
ATGATTACCCCCAGTTCCAGCCAGAGCCTGGGAATGAAGGTGCAGATGGAGTCGGAACAATCTCCCAAAT
TGCAGGAGGAACTGGACAGGAGTCCCAGCTCGGTGGACGGCTCGGCCATAAGGAACGGAACAGACATGCA
GACCGAGTCGCCCGCAGAAGCCACTAGTAGCCCTGTGGAAGTGGCTGAAGATCCTGGAGCCAACTTGTTC
CCGCCACCACTACCCCAGCCCCGGATCTGTATGTGGAAATACCTGGACATCCATTCTATGCACAGACTGG
AGAAGGCAGCCACTGTGGAAAAGATGAGAGAGGTTCTTGCTGAGCTCTTGGAGCTTGGCTTTCCTGAGCA
GAGCCTGCGGGATGCCATTATCTTGGACCTCTTCTCCCACGCACTTATCTTCTGCCGCCAGCAGGGCTTT
TCACCAGAGCAGACATCAGCAGCCTGTGCCATGCTCCAAGATCTTCACAAGGCCTGTGTTGCTACCCCTC
TGGGCAACGTGGAGGAATGCTACCGCTACTTTACCAGCGTTCTCTTTTGTCATGGAATCAGGCGGCCCCC
TTTCAGCATTGACCTCTTTAAAGAGGAACAGCTGCTGGCACTGGCAGACTATGTGGTCAACACCTACTTC
CGCCACTTCAAGCTCTACAAATATGTCTTCACCCCACAGGTGCGACTGGACCTATCTTTGACTTACACGG
GGTTACAGCCACTCACGCTCTGGCCAGAGGAGAAAGAAAACGAGGAGATGATGGTGGTAGAGCAAGTAGC
TACTCCACAGGAGGAAGAGCCGGAAACTGTGACGGAGCCAGAGCAACAGCCAAGTGAGGTGTGCATCCTC
CAGACCTACATCAAGTCCCAGCTGAGCAAGGAGCTGAGGCAGCTCCAGCAGCTGGTGGAGGAGCGGCTCA
AGGAGAGCGAGGAAAGGCTGAGCAGCAAACTGGCTGCACTGGAGCAGCCGTTCCAGACACCTCCCAGCAA
AGGCAAGACCAAGACCAAGTGA

Translation (333 aa):
MITPSSSQSLGMKVQMESEQSPKLQEELDRSPSSVDGSAIRNGTDMQTESPAEATSSPVEVAEDPGANLF
PPPLPQPRICMWKYLDIHSMHRLEKAATVEKMREVLAELLELGFPEQSLRDAIILDLFSHALIFCRQQGF
SPEQTSAACAMLQDLHKACVATPLGNVEECYRYFTSVLFCHGIRRPPFSIDLFKEEQLLALADYVVNTYF
RHFKLYKYVFTPQVRLDLSLTYTGLQPLTLWPEEKENEEMMVVEQVATPQEEEPETVTEPEQQPSEVCIL
QTYIKSQLSKELRQLQQLVEERLKESEERLSSKLAALEQPFQTPPSKGKTKTK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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