NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS21805.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21805.1 Public Mus musculus 7 Cog7 23 108 98 CCDS HistoryNCBI Gene:233824Re-query CCDS DB by CCDS ID:21805.1Re-query CCDS DB by GeneID:233824See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21805.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000057576.7 ENSMUSP00000058990.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000057576.7Link to Ensembl Protein Viewer:ENSMUSP00000058990.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000057576Re-query CCDS DB by Protein ID:ENSMUSP00000058990
Original member Current member NCBI NM_001033318.3 NP_001028490.2 Accepted alive Link to Nucleotide Sequence:NM_001033318.3Link to Protein Sequence:NP_001028490.2Re-query CCDS DB by Nucleotide ID:NM_001033318Re-query CCDS DB by Protein ID:NP_001028490Link to BLAST:NP_001028490.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001028490.2 770 Q3UM29 770 99.7403% 0 2

Chromosomal Locations for CCDS 21805.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 121923302 121923468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 121925424 121925567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 121929187 121929301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 121930530 121930613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 121935658 121935798 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 121936954 121937140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 121941170 121941235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 121943778 121943894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 121949745 121949899 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 121951163 121951290 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 121955930 121956128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 121963138 121963260 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 121964201 121964283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 121971280 121971448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 121977267 121977383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 121977616 121977764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 121981417 121981585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2313 nt):
ATGGACTTCTCCAAGTTCCTGGCTGACGACTTCGACGTGAAGGACTGGATTAATGCGGCCTTCAGAGCCG
GCCCCAAAGACGGGGCGGCGGGGAAGGCGGACGGTCACGCAGCCACCCTGGTAATGAAGCTGCAGCTGTT
CATCCAGGAGGTGAACCACGCCGTGGAGGAAACAAGTCTCCAGGCCCTCCAGAACATGCCCAAAGTGCTC
CGTGATGTGGAAGCCCTGAAGCAGGAGGCGTCTTTCCTGAAAGAGCAAATGATTCTTGTCAAAGAGGACA
TTAAAAAGTTTGAGCAGGACACGTCACAGTCCATGCAGGTGCTGGTAGAGATTGACCAGGTGAAGTCCAG
GATGCAGCTTGCTGCGGAATCTCTTCAGGAAGCTGACAAGTGGAGCACGCTGAGTGCTGATATTGAGGAG
ACCTTCAAAACTCAAGACATAGCTGTGATTTCTGCAAAGCTGACCGGCATGCAGAACAGCTTGATGATGC
TTGTGGATACTCCGGACTACTCTGAAAAGTGTGTGCACCTGGAGGCTCTGAAGAACAGACTGGAGGCCCT
GGCCAGCCCCCAGATCGTAGCATCGTTCACCTCTCAGTCTGTGGATCAGTCTAAAGTGTTTGTGAAGGTG
TTTACTGAAATCGACCGGATGCCCCAGCTCCTTGCATACTACTACAAGTGTCACAAGGTACAGCTTCTAG
CAACCTGGCAAGAGCTGTGTCAGAGTGACCTTCCACTGGACCGGCAGCTCACTGGCCTCTATGATGCCCT
GCTTGGCGCGTGGCACACACAAACCCAGTGGGCCACACAGGTTTTCAAGAACCCCCACGAGGTGGTGACG
GTGCTGCTGATTCAGACCCTGGGGGCCTTGGTGCCCTCCCTGCCCATGTGCCTCAGTGCAGGTGTGGAGA
GAGCCGGACCGGAGCTGGAGCTCACCAGACTGCTGGAGTTTTACGACACCACCGCCCACTTTGCCAAGGG
GCTGGAAATGGCGCTGCTCCCCCATCTCCAGGACCACAACCTGGTGAAAGTTGTGGAGCTGGTGGATGCT
GTGTATGGTCCCTATAAACCCTTCCAGCTGAAGTACGGTGACATGGAGGAGAACAACCTTCTCATACAGA
TCAGCGCTGTGCCTCTGGAACACGGGGAAGTGATTGACTGCGTTCAGGAGCTGAGCCACTCTGTGCACAA
GCTCTTTGGCTTGGCATCTGCAGCTGTTGACAGATGTGCCAAATTCACCAATGGCCTGGGGACCTGTGGA
CTGCTGACAGCCCTGAAATCCCTCTTTGCCAAGTATGTGTCTCACTTCACCAACGCTCTCCAGTCCATTC
GAAAGAAGTGCAAGCTGGATGACATTCCTCCCAACTCCCTGTTTCAGGAAGACTGGACCGCTTTTCAGAA
TTCGGTCAGGATCATAGCCACCTGTGGAGAGCTCTTGCGCCAGTGTGGGGACTTTGAGCAGCAGCTGGCA
AACAGGATCCTGTCCACAGCGGGGAAGTATCTGTCTGACTCCTACAGCCCTCGGAGCCTGGCAGGTTTTC
AGGACAGCATCTTGACAGACAAGAAGAGCCCTGCCAAGAACCCATGGCAGGAATATAATTACCTCCAGAA
AGATAACCCTGCTGAATATGCCAGTTTAATGGAAATACTTTATACCCTCAAGGAGAAGGGCTCCAGTAAC
CACAACCTACTGTCTGCGTCACGCACAGCCCTGACCCGGCTGAACCAGCAGGCCCACCAGCTGGCTTTCG
ACTCGGTCTTCTTGCGCATCAAACAGCAGCTGCTGCTCGTTTCCAGGATGGATAGCTGGAACACAGCCGG
CATTGGTGAAACCCTGACAGACGATCTGCCTGCCTTCAGCCTCACACCTCTCGAGTACATCAGCAACATT
GGGCAGTACATCATGTCCCTGCCCCTGAATCTTGAGCCATTTGTGACTCAAGAGGACTCTGCATTAGAGT
TGGCCTTGCATGCTGGGAAGCTGCCATTCCCTCCTGAGCAAGGGGATGAACTTCCCGAGTTGGACAACAT
GGCTGACAATTGGCTGGGCTCCATTGCCAGAGCCACTATGCAGACCTACTGTGACGTGATCCTCCAGATC
CCGGAGGTGACCCCGCACTCCACCAAGCAACTGGCCACCGACATCGACTATCTGATCAACGTGATGGACG
CACTGGGCCTGCAGCCATCACGAACCCTCCAGAACATTGCGGCGCTCTTGAAGGCCAAGCCTGAGGAATA
TAGACAGGTCAGCAAAGGCCTGCCACGCCGCCTTGCAGCCACGGTGGCCACCATGCGTGGTGTGAATTAT
TGA

Translation (770 aa):
MDFSKFLADDFDVKDWINAAFRAGPKDGAAGKADGHAATLVMKLQLFIQEVNHAVEETSLQALQNMPKVL
RDVEALKQEASFLKEQMILVKEDIKKFEQDTSQSMQVLVEIDQVKSRMQLAAESLQEADKWSTLSADIEE
TFKTQDIAVISAKLTGMQNSLMMLVDTPDYSEKCVHLEALKNRLEALASPQIVASFTSQSVDQSKVFVKV
FTEIDRMPQLLAYYYKCHKVQLLATWQELCQSDLPLDRQLTGLYDALLGAWHTQTQWATQVFKNPHEVVT
VLLIQTLGALVPSLPMCLSAGVERAGPELELTRLLEFYDTTAHFAKGLEMALLPHLQDHNLVKVVELVDA
VYGPYKPFQLKYGDMEENNLLIQISAVPLEHGEVIDCVQELSHSVHKLFGLASAAVDRCAKFTNGLGTCG
LLTALKSLFAKYVSHFTNALQSIRKKCKLDDIPPNSLFQEDWTAFQNSVRIIATCGELLRQCGDFEQQLA
NRILSTAGKYLSDSYSPRSLAGFQDSILTDKKSPAKNPWQEYNYLQKDNPAEYASLMEILYTLKEKGSSN
HNLLSASRTALTRLNQQAHQLAFDSVFLRIKQQLLLVSRMDSWNTAGIGETLTDDLPAFSLTPLEYISNI
GQYIMSLPLNLEPFVTQEDSALELALHAGKLPFPPEQGDELPELDNMADNWLGSIARATMQTYCDVILQI
PEVTPHSTKQLATDIDYLINVMDALGLQPSRTLQNIAALLKAKPEEYRQVSKGLPRRLAATVATMRGVNY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH