NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS21798.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21798.1 Public Mus musculus 7 Cdr2 23 108 98 CCDS HistoryNCBI Gene:12585Re-query CCDS DB by CCDS ID:21798.1Re-query CCDS DB by GeneID:12585See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21798.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000033169.8 ENSMUSP00000033169.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000033169.8Link to Ensembl Protein Viewer:ENSMUSP00000033169.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000033169Re-query CCDS DB by Protein ID:ENSMUSP00000033169
Original member Current member NCBI NM_007672.2 NP_031698.2 Accepted alive Link to Nucleotide Sequence:NM_007672.2Link to Protein Sequence:NP_031698.2Re-query CCDS DB by Nucleotide ID:NM_007672Re-query CCDS DB by Protein ID:NP_031698Link to BLAST:NP_031698.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031698.2 455 P97817 455 100% 0 0

Chromosomal Locations for CCDS 21798.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 120957933 120958797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 120960092 120960256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 120960510 120960658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 120970326 120970438 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 120981977 120982052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1368 nt):
ATGCTGGCAGATAACCTAGTGGAGGAGTTCGAGATGGAGGATGAGCCGTGGTACGACCACCGGGACCTCC
AGCAAGATCTCCAGCTTGCTGCTGAACTTGGAAAGACGCTACTGGATCGGAACACAGAGTTGGAAGATTC
TCTTCAGCAGATGTACACAACCAATCAGGAGCAGTTACAGGAAATCGAGTACCTGACCAAGCAGGTGGAG
CTTCTACGGCAAATGAATGAGCAGCATGCGAAAGTTTATGAGCAGTTAGATGTCACAGCAAGAGAACTGG
AAGAAACCAACCAGAAGCTAGTTGCTGAGAGCAAGGCCTCACAGCAGAAAATCCTCAGCCTGACAGAAAC
AATTGAATGCCTGCAAACCAACATTGATCACCTGCAGAGCCAAGTGGAGGAGCTGAAGTCTTCCAGCCAA
GGAAGAGGGAGGCAGAAGGCATGTGACCAGGAGAAACCAGCACCCAGCTTCTCCTGTCTGAAAGAGCTGT
ATGACCTCCGCCAACACTTTGTGTATGACCACGTGTTCGCTGAGAAGATCACTTCCTTGCAGAGCCAACA
GAGCCCTGATGAAGAAGAAAATGAGCACCTGAAAAAGGCAGTGACGATGTTGCAGGCCCAGCTAAGTCTA
GAGAGGAAGAAGCGAGTGAGCGTGGAGGCAGAGTATAAAGTGGTGCTGAAGGAGAACAGTGAGCTGGAGC
AGCAGCTGGGGGCCACAGATGCCTACCGAGCCCGGGCCCTGGAGTTGGAGGCAGAGGTGGCTGAGATGCG
GCAGATGCTGCAGGCAGAGCATCCTTTTGTGAATGGTGTGGAGAAGCTGGTGCCCGACTCTCTGTTTGTT
CCTTTCAAGGAGCCTAGCCAGAGTCTGCTGGAGGAAATGTTCCTGGCTGCTCCAGAAGCACCTAGAAAAC
CACTCAAACGAAGCAGCAGTGAGACGGCGCTCAGCAGTTTGGCAGGGGATGACATCGTGAAGGACCATGA
GGACACTTGCATCAGGAGGGCTAAGGCTGTGAAGCAGAGGGGCATCTCCCTTCTGCATGAAGTGGACACT
CAGTACAGTGCCCTGAAAGTGAAGTATGAAGAGCTACTGAAGAAGTGCCAGCAGGAGCAGGACTCACTGT
CACACAAGGCTGTGCAGACCTCTAGACTACTGACTAGGGACCTGACAGGACTGGTCACGCAGTCTGAGGC
GGGGGCCAGTGGCTGGGAACCCACCCCTGTAAGCCCAGAGTCCATCAGTTCCCCCACCACTACACCTCCA
GAATACAAAGCACTATTTAAGGAGATATTTAGTTGCATCAAGAAAACAAAGCAGGAAATAGATGAACAGA
GAACAAAATACCCTTCTCTCTCCTCTTACTCGTACTGA

Translation (455 aa):
MLADNLVEEFEMEDEPWYDHRDLQQDLQLAAELGKTLLDRNTELEDSLQQMYTTNQEQLQEIEYLTKQVE
LLRQMNEQHAKVYEQLDVTARELEETNQKLVAESKASQQKILSLTETIECLQTNIDHLQSQVEELKSSSQ
GRGRQKACDQEKPAPSFSCLKELYDLRQHFVYDHVFAEKITSLQSQQSPDEEENEHLKKAVTMLQAQLSL
ERKKRVSVEAEYKVVLKENSELEQQLGATDAYRARALELEAEVAEMRQMLQAEHPFVNGVEKLVPDSLFV
PFKEPSQSLLEEMFLAAPEAPRKPLKRSSSETALSSLAGDDIVKDHEDTCIRRAKAVKQRGISLLHEVDT
QYSALKVKYEELLKKCQQEQDSLSHKAVQTSRLLTRDLTGLVTQSEAGASGWEPTPVSPESISSPTTTPP
EYKALFKEIFSCIKKTKQEIDEQRTKYPSLSSYSY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH