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Report for CCDS21704.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21704.1 Public Mus musculus 7 Or5p58 23 108 98 CCDS HistoryNCBI Gene:258728Re-query CCDS DB by CCDS ID:21704.1Re-query CCDS DB by GeneID:258728See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 21704.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000081184.2 ENSMUSP00000079948.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000081184.2Link to Ensembl Protein Viewer:ENSMUSP00000079948.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000081184Re-query CCDS DB by Protein ID:ENSMUSP00000079948
Original member Current member EBI ENSMUST00000217304.1 ENSMUSP00000150755.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000217304.1Link to Ensembl Protein Viewer:ENSMUSP00000150755.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000217304Re-query CCDS DB by Protein ID:ENSMUSP00000150755
Original member Current member NCBI NM_146733.1 NP_666944.1 Accepted alive Link to Nucleotide Sequence:NM_146733.1Link to Protein Sequence:NP_666944.1Re-query CCDS DB by Nucleotide ID:NM_146733Re-query CCDS DB by Protein ID:NP_666944Link to BLAST:NP_666944.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_666944.1 323 Q8VG03 323 100% 0 0

Chromosomal Locations for CCDS 21704.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 108094597 108095568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (972 nt):
ATGGCTTTCCTGGAGGATGGGAACCACACTGCAGTGACAGAGTTCATTTTGGTGGGTTTAACAGATGACC
CAGTCCTTAAAGTCATCCTCTTCACCATCATCCTGTGCATCTACCTGGTGACTGTGTCTGGGAACCTCAG
CACCATCCTTCTCATCAGAGTCTCTTCCCAGCTCCATCACCCTATGTACTTTTTCCTCAGCCACTTGGCT
TCTGTTGACTTAGGCTACTCATCTTCTGTCACACCCAATATGCTTATCAACTTCCTGGCAGAGAATAATA
CCATCTCCTACATTGGATGTTCTATACAGTTCGGCTCAGCTACTTTCTTTGGAGTACTTGAATGCTTCCT
TCTGGCTGTCATGGCTTATGATCGCTTTGTAGCAATCTGCAACCCACTGCTTTATTCCATCAAAATGTCC
ACACAAGTCTGTGTCAAGTTGGTTGTAGGATCTTATATAGGGAGTTCTCTAAATGCTTCCTTTGTCACTG
TTTCTATATTTAATTTGCTCTTCTGTGGACCAAACAAAATCAATCACTTTTTCTGTGATTTCGATCCTTT
GATTGAGCTCTCTTGTTCTGATGTCAGTGTCCCTGTGGCTGTTACCTCATGTTCTGCTGGCTTAATTACT
ATGATTACAGTGTTTGTCATAGCCGTCTCCTATACCTATATCCTCATCACTGTCCTGAAGATGCGCTCCA
CTGAGGGCCGCCACAAAGCCTTCTCCACCTGCACCTCCCACCTCACAGCAGTCACTCTGTTCTATGGAAC
TGTCACATTCATTTATGTGATGCCCAAGTCAAATTACTCTACAGACCAGAACAAGGTGGTGTCTGTGTTC
TACATGGTGGTGATCCCCATGTTGAACCCCCTCATCTACAGCCTCAGAAACAATGAGATTAAGGGTGCTC
TGAAGAGACAGCTTGGTAAGAAAATATTTTCTCAGAGTAATATATTGTTTTGTAAAAGTTAA

Translation (323 aa):
MAFLEDGNHTAVTEFILVGLTDDPVLKVILFTIILCIYLVTVSGNLSTILLIRVSSQLHHPMYFFLSHLA
SVDLGYSSSVTPNMLINFLAENNTISYIGCSIQFGSATFFGVLECFLLAVMAYDRFVAICNPLLYSIKMS
TQVCVKLVVGSYIGSSLNASFVTVSIFNLLFCGPNKINHFFCDFDPLIELSCSDVSVPVAVTSCSAGLIT
MITVFVIAVSYTYILITVLKMRSTEGRHKAFSTCTSHLTAVTLFYGTVTFIYVMPKSNYSTDQNKVVSVF
YMVVIPMLNPLIYSLRNNEIKGALKRQLGKKIFSQSNILFCKS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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