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Report for CCDS21617.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21617.1 Public Mus musculus 7 Or52h9 23 108 98 CCDS HistoryNCBI Gene:258809Re-query CCDS DB by CCDS ID:21617.1Re-query CCDS DB by GeneID:258809See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21617.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000098176.4 ENSMUSP00000095778.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000098176.4Link to Ensembl Protein Viewer:ENSMUSP00000095778.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000098176Re-query CCDS DB by Protein ID:ENSMUSP00000095778
Original member Current member EBI ENSMUST00000216904.1 ENSMUSP00000150776.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000216904.1Link to Ensembl Protein Viewer:ENSMUSP00000150776.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000216904Re-query CCDS DB by Protein ID:ENSMUSP00000150776
Original member Current member NCBI NM_146813.2 NP_667024.1 Accepted alive Link to Nucleotide Sequence:NM_146813.2Link to Protein Sequence:NP_667024.1Re-query CCDS DB by Nucleotide ID:NM_146813Re-query CCDS DB by Protein ID:NP_667024Link to BLAST:NP_667024.1

Chromosomal Locations for CCDS 21617.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 104552921 104553862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (942 nt):
ATGTATAACCTAAGCTGTTACAACCCAGCATCCTTCACTCTTGTTGGCATACCTGGTTTGGAAAAGTTCC
ACATCTGGATTGGGATTCCCTTTTGTGTCATCTATGTTGTGGCTATTGTAGGCAACTGCATTCTCCTCTA
CCTGATTGCAGTGGAGCAGAGCCTTCACGAGCCCATGTTTATATTCCTGTCCATGCTGGCCAGCACAGAC
CTCATCTTGTCCACTGCCACAGTGCCCAAACTGCTCAGTAACCTTTGGTTTGGGTCCCAAGAAATAACCT
TCTCTGGTTGTCTCACTCAGATGTTTTTCCTCCACTTCAGCTTTGTGGTGGACTCTGCTATCCTGTTAGC
CATGGCTTTTGATCGCTATGTGGCTATCTGTTTGCCCTTGAGGTATAGCACCATCCTGACTCCGCAGGTG
ATTGTCAAGATTATGGTGAGCATCATTGTGAGGAGCTTCTCAGTCATCCTGCCAGATGTTTTCCTGCTGA
GGCGGTTGCCATTTTGCAAGACCCGTGTCATTCCTCACACATACTGTGAGCATATAGGTGTTGCAAGGCT
TTCCTCTGCAGACATCTCTATCAACATCTGGTATGGGTTTTCTGTTCCGCTCATGACTGTAATCTCAGAT
GTCATCCTGATTGCAGTATCCTACATCTTCATCCTCCGGGCAGTTTTTCTACTCTCTTCCCAGGGTGCCC
GCCAAAAGGCCTTGAGCACATGTGGTTCCCATATCTGTGTCATTCTCATGTTCTACACACCTGCCTTCTT
CTCCATCCTCGCTCATCGCTTTGGGCACAGTGTTCCTCGTAATGTTCTCATCTTATTTGCCAACTTCTAT
GTGGCCATCCCTCCTGCTCTAAATCCAGTTGTTTATGGAGTGAAGACCAAGCAGATCCAGGACAAATTCC
TTCTTTTCTTCTCTTTGAGAAAGACACAATGA

Translation (313 aa):
MYNLSCYNPASFTLVGIPGLEKFHIWIGIPFCVIYVVAIVGNCILLYLIAVEQSLHEPMFIFLSMLASTD
LILSTATVPKLLSNLWFGSQEITFSGCLTQMFFLHFSFVVDSAILLAMAFDRYVAICLPLRYSTILTPQV
IVKIMVSIIVRSFSVILPDVFLLRRLPFCKTRVIPHTYCEHIGVARLSSADISINIWYGFSVPLMTVISD
VILIAVSYIFILRAVFLLSSQGARQKALSTCGSHICVILMFYTPAFFSILAHRFGHSVPRNVLILFANFY
VAIPPALNPVVYGVKTKQIQDKFLLFFSLRKTQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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