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Report for CCDS21586.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21586.1 Public Mus musculus 7 Or52a20 23 108 98 CCDS HistoryNCBI Gene:436002Re-query CCDS DB by CCDS ID:21586.1Re-query CCDS DB by GeneID:436002See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 21586.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000098194.1 ENSMUSP00000095796.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000098194.1Link to Ensembl Protein Viewer:ENSMUSP00000095796.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000098194Re-query CCDS DB by Protein ID:ENSMUSP00000095796
Original member Current member EBI ENSMUST00000215723.1 ENSMUSP00000150329.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000215723.1Link to Ensembl Protein Viewer:ENSMUSP00000150329.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000215723Re-query CCDS DB by Protein ID:ENSMUSP00000150329
Original member Current member NCBI NM_001025386.1 NP_001020557.1 Accepted alive Link to Nucleotide Sequence:NM_001025386.1Link to Protein Sequence:NP_001020557.1Re-query CCDS DB by Nucleotide ID:NM_001025386Re-query CCDS DB by Protein ID:NP_001020557Link to BLAST:NP_001020557.1

Chromosomal Locations for CCDS 21586.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 103716596 103717546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (951 nt):
ATGCCCCATCTCAACAGCACCATCTTCAGGCCTTCAGTGCTGACTCTGACTGGGATTCCTGGCTTGGAGT
CTGTGCAGTTCTGGATTGGGATTCCTTTCTGTATCATGTACATCATTGCACTTTTGGGGAATTCTCTACT
CCTAGTTGTCATCAAAGTTGAGCGAAGCCTCCATGAACCCATGTACCTCTTCCTAGCAATGCTTGGAGCA
ACAGACATTGCCATCAGTACTTGCATCTTACCAAAAATGTTAGGAATATTCTGGTTTCACCTTCCAACCA
TATACTTTGATGTCTGCCTCTTACAGATGTGGCTGATTCACACATTCCAATGTATTGAGTCAGGCATCTT
GTTTGCCATGGCAATGGACCGTTATGTGGCAATCTGTGATCCTCTAAGACATGCATCCATCTTTACCCAG
CGACTCCTCACTCAAATAGGAGTAGGAGTCACACTCAGAGCAGCCCTGTTTGTAGCTCCATGTCTCATTC
TCATCAAATGCAGGTTGAAATTCTACTGGACCACTGTTGTTTCCCATTCATACTGTGAGCACATGGCCAT
TGTGAAGCTGGCAGCAGAAGATGTTCATGTCAACAAGATCTATGGTCTGTTTGTGGCCTTCAGTATTCTT
GGACTAGACATAATTTTCATCACACTTTCCTACATTAGAATATTTATAACGGTCTTCAAGCTCCCTCAAA
AGGAAGCAAGACTCAAAGCCTTTAATACATGTATTGCCCATATTTGTGTCTTCTTGGAGTTTTACCTTCT
GGCCTTCTTCTCCTTCTTTACACATAGGTTTGGCTACCATGTTCCATCTTACATTCACATTCTCCTGTCC
AACCTTTACCTACTTGTCCCACCTTTGCTCAATCCTATTGTTTATGGTGTGAAGACCAAACAGATTCGAG
ATCAAGTGTCCAAAATTTTGTATTGTAATTATTCTTATTGA

Translation (316 aa):
MPHLNSTIFRPSVLTLTGIPGLESVQFWIGIPFCIMYIIALLGNSLLLVVIKVERSLHEPMYLFLAMLGA
TDIAISTCILPKMLGIFWFHLPTIYFDVCLLQMWLIHTFQCIESGILFAMAMDRYVAICDPLRHASIFTQ
RLLTQIGVGVTLRAALFVAPCLILIKCRLKFYWTTVVSHSYCEHMAIVKLAAEDVHVNKIYGLFVAFSIL
GLDIIFITLSYIRIFITVFKLPQKEARLKAFNTCIAHICVFLEFYLLAFFSFFTHRFGYHVPSYIHILLS
NLYLLVPPLLNPIVYGVKTKQIRDQVSKILYCNYSY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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