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Report for CCDS21536.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21536.1 Public Mus musculus 7 Or52p2 23 108 98 CCDS HistoryNCBI Gene:258750Re-query CCDS DB by CCDS ID:21536.1Re-query CCDS DB by GeneID:258750See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21536.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000098224.2 ENSMUSP00000095827.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000098224.2Link to Ensembl Protein Viewer:ENSMUSP00000095827.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000098224Re-query CCDS DB by Protein ID:ENSMUSP00000095827
Original member Current member EBI ENSMUST00000213540.2 ENSMUSP00000150582.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000213540.2Link to Ensembl Protein Viewer:ENSMUSP00000150582.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000213540Re-query CCDS DB by Protein ID:ENSMUSP00000150582
Original member Current member NCBI NM_146755.2 NP_666966.1 Accepted alive Link to Nucleotide Sequence:NM_146755.2Link to Protein Sequence:NP_666966.1Re-query CCDS DB by Nucleotide ID:NM_146755Re-query CCDS DB by Protein ID:NP_666966Link to BLAST:NP_666966.1

Chromosomal Locations for CCDS 21536.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 102587794 102588741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (948 nt):
ATGCAACACACAAACCACAGCCATCAGAACCCAAGCTCCTTCCTGCTCATGGGGATTCCCGGCCTGGAGG
CGTCCCACTTTTGGATTGCATTTCCTTTCTGCTCCATGTATGCCCTAGCAGTTCTTGGCAACATGGCAGT
CCTGTTGGTGGTGCGCTCTGAGCCTTCACTGCACCAACCCATGTACCTGTTCCTGTGCATGCTGTCCACT
ATTGACCTGATACTCTGCACCTCCACTGTCCCCAAACTCCTCGCACTCTTTTGGGCAAATGCAGCTGAGA
TTGCCTTTGGAGCCTGTGCTACCCAGATGTTCTTTATCCATGGTTTCTCGGCTGTAGAATCCGGTATCCT
GCTATCAATGGCCTTTGATCGCTACTTGGCCATCTGCCGACCATTGCACTACGGGTCATTGCTGTCCTCA
GAGTCTGTGAGCAAGTTAGGAGCTGCTGCTCTGCTCCGTGGCCTGGGGCTCATGACCCCACTTACCTGCC
TACTGGCAAGGCTGAGCTACTGTGGCCGAGTGGTAGCACACTCCTACTGTGAGCACATGGCTGTGGTGAA
GCTGGCTTGTGGGGGCACACAACCAAACAACATATATGGCATCACAGCAGCCACACTGGTGGTAGGAACT
GACTCCATTTGTATTGCCATATCCTATGCACTCATCCTCCGGGCTGTGTTGGGCCTCTCCTCCAAAGAGG
CCAGGGCAAAGACCTTTGGCACTTGTGGCTCCCACCTAGGTGTCATCCTTCTCTTCTATACACCAGGGCT
CTTCTCATTCTATACCCAGCGCTTTGGTCAACATGTACCCAGGCACGTCCACATCCTCCTGGCTGACCTC
TACCTCGTCGTGCCGCCCATGCTCAACCCCATCATCTATGGGATGAAAACCAAGCAGATCCGAGATGGAG
CACTCCGACTACTCAAGAGGGGTCCTGCCCAATCATAG

Translation (315 aa):
MQHTNHSHQNPSSFLLMGIPGLEASHFWIAFPFCSMYALAVLGNMAVLLVVRSEPSLHQPMYLFLCMLST
IDLILCTSTVPKLLALFWANAAEIAFGACATQMFFIHGFSAVESGILLSMAFDRYLAICRPLHYGSLLSS
ESVSKLGAAALLRGLGLMTPLTCLLARLSYCGRVVAHSYCEHMAVVKLACGGTQPNNIYGITAATLVVGT
DSICIAISYALILRAVLGLSSKEARAKTFGTCGSHLGVILLFYTPGLFSFYTQRFGQHVPRHVHILLADL
YLVVPPMLNPIIYGMKTKQIRDGALRLLKRGPAQS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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