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Report for CCDS21534.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21534.1 Public Mus musculus 7 Or52b3 23 108 98 CCDS HistoryNCBI Gene:259105Re-query CCDS DB by CCDS ID:21534.1Re-query CCDS DB by GeneID:259105See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21534.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000098227.1 ENSMUSP00000095829.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000098227.1Link to Ensembl Protein Viewer:ENSMUSP00000095829.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000098227Re-query CCDS DB by Protein ID:ENSMUSP00000095829
Original member Current member EBI ENSMUST00000217478.1 ENSMUSP00000150373.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000217478.1Link to Ensembl Protein Viewer:ENSMUSP00000150373.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000217478Re-query CCDS DB by Protein ID:ENSMUSP00000150373
Original member Current member NCBI NM_147101.2 NP_667312.2 Accepted alive Link to Nucleotide Sequence:NM_147101.2Link to Protein Sequence:NP_667312.2Re-query CCDS DB by Nucleotide ID:NM_147101Re-query CCDS DB by Protein ID:NP_667312Link to BLAST:NP_667312.2

Chromosomal Locations for CCDS 21534.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 102554286 102555236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (951 nt):
ATGGCACCTTTTAACTACACAGGAACCAGCCATTCTGTCTTCATTCTGTTGGGCATCCCTGGCCTGGAAG
AGCAGCACTTGTGGATCTCTCTCCCCTTCTTCATTTCCTACCTGGTGGCACTCTTTGGAAACATCACTCT
CATCCTTGTAATCATTGCAGAACGCAGCCTCCATGAGCCCATGTACCTCTTCCTCTGCATGCTGGCTGCG
GCTGACCTCATCTTGTCTACCACCACCGTGCCCAAGGCTCTGGCCATATTTTGGTTTCGTGCGGGAGCGA
TTTCCCTTGATGGCTGTGTCACTCAAATCTTCTTCATCCATGCTACCTTCATTGCCGAGTCGGGGATTTT
GCTGGCCATGGCATTTGACCGCTATGTGGCCATCTGTGACCCACTACACTACAGCACAGTGCTCAGTCAT
GTGGTAATTGTTAGGATCGGCTTGGCTGTGGTCCTGAGAAGTTTCTGTGTGATCCTCCCAGATGTGTTCC
TGGTGAAACGCCTGCCTTTCTGCCGTAGCAATGTGCTGCCACACACCTACTGTGAACACATGGCTGTTGC
GAGGTTTGCCTGTGCTGATATTCGCGTCAATGTTTGGTATGGCTTGTCTGTCCTCCTCTCTACTGTAGTG
CTCGATGCTCTGCTCATCTTGGTCTCCTACGGTCTCATTCTTCACACAGTCTTCCGCCTCCCTTCCAGAG
GAGCCCGGCAAAAGGCTCTGGGCACATGTGGATCCCACCTTGGTGTTATTTCCATGTTTTACCTGCCTGG
CATTTTTACCATAATTACCCAGAGGTTTGGGCAGCACGTTCCTCTCCATACCCACATCCTTCTGGCCAAT
GTCTGCATGCTGGCCCCTCCCATGCTGAATCCCATCATCTATGGGATCAAAACCAGACAGATTCGTGAGC
GTGTACTAAGTTCTTTGTCTTCACAGTGGAAACTATGCTGA

Translation (316 aa):
MAPFNYTGTSHSVFILLGIPGLEEQHLWISLPFFISYLVALFGNITLILVIIAERSLHEPMYLFLCMLAA
ADLILSTTTVPKALAIFWFRAGAISLDGCVTQIFFIHATFIAESGILLAMAFDRYVAICDPLHYSTVLSH
VVIVRIGLAVVLRSFCVILPDVFLVKRLPFCRSNVLPHTYCEHMAVARFACADIRVNVWYGLSVLLSTVV
LDALLILVSYGLILHTVFRLPSRGARQKALGTCGSHLGVISMFYLPGIFTIITQRFGQHVPLHTHILLAN
VCMLAPPMLNPIIYGIKTRQIRERVLSSLSSQWKLC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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