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Report for CCDS21526.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21526.1 Public Mus musculus 7 Art1 23 108 98 CCDS HistoryNCBI Gene:11870Re-query CCDS DB by CCDS ID:21526.1Re-query CCDS DB by GeneID:11870See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21526.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000033300.3 ENSMUSP00000033300.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000033300.3Link to Ensembl Protein Viewer:ENSMUSP00000033300.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000033300Re-query CCDS DB by Protein ID:ENSMUSP00000033300
Original member Current member EBI ENSMUST00000209809.1 ENSMUSP00000147911.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000209809.1Link to Ensembl Protein Viewer:ENSMUSP00000147911.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000209809Re-query CCDS DB by Protein ID:ENSMUSP00000147911
Original member NCBI NM_009710.4 NP_033840.2 Updated not alive Link to Nucleotide Sequence:NM_009710.4Link to Protein Sequence:NP_033840.2Re-query CCDS DB by Nucleotide ID:NM_009710Re-query CCDS DB by Protein ID:NP_033840
Current member NCBI NM_009710.5 NP_033840.2 Accepted alive Link to Nucleotide Sequence:NM_009710.5Link to Protein Sequence:NP_033840.2Re-query CCDS DB by Nucleotide ID:NM_009710Re-query CCDS DB by Protein ID:NP_033840Link to BLAST:NP_033840.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033840.2 325 Q60935 325 100% 0 0

Chromosomal Locations for CCDS 21526.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 102106303 102106365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 102106667 102107432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 102108727 102108768 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 102110695 102110801 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (978 nt):
ATGAAGATTCCTGCTATGATGTCTCTCCTACTGGTGTCTGTGGGTCTCAGGGATGGAGTTCAGGTTCAAA
GTTACTCCATCTCACAACTAGACATCTTTTCTCAAGAAACACCCCTGGACATGGCCCCAGCGTCCTTTGA
TGACCAGTATGCTGGCTGCCTGGCAGACATGACAGCGGCCCTGCCAGATCTCAACCACTCAGAGTTTCAG
GCCAACAAAGTATACGCGGATGGCTGGGCTCAGGCCAACAATCAGTGGCAGGAGCGCAGGGCCTGGGGGT
CCGTGTGGGGCTCCTTGCCCCCATCACCGCCGGGCTTCCGGGATGAGCACGGGGTGGCGCTGCTGGCCTA
CACCGCCAACAGCCCCCTGCACAAGGAGTTCAACGCAGCTGTGCGTGAGGCGGGACGTTCTCGGGCCCAT
TACCTCCACCACTTCTCCTTCAAGACCCTCCACTTCCTGCTCACCGAGGCCCTGCAACTGCTCCGGAGCC
ACCGATCTCGCGGGTGCCAGCAGGTGTACAGGGGGGTGCACGGCCTGCGCTTTCGGCCAGCGGGGCCTGG
CGCCACCGTTAGGCTGGGGGGCTTTGCTTCTGCGTCCCTCAAGAACGTTGCCGCCCAACAATTTGGCGAG
GACACCTTCTTCGGTATCTGGACCTGCCTTGGGGCCCCCATCAGGGGCTACTCCTTTTTCCCTGAAGAGG
AGGAGGTGCTGATCCCTCCTTTCGAAACTTTCCAGGTGATCAATACAAGCCGACCCACCCAGGGTCCCGC
ACGCATCTACCTCCGCGCTCTGGGCAAACGCAGTACATACAACTGTGAATACATCAAAGAAAAGAAGTGC
AGGTCTGGGCCCTGCTGGCTGGGTAGCTCAGCCCCAGGCTCCATTTCTGCTTCCTGCTCTCTTCTGCTGC
TGCTCTTGTTCCTTGTGCTGAGCGCCCTTCCAGAGAATCCAGGTCTCCAGCAACTTACCCGATGTTGA

Translation (325 aa):
MKIPAMMSLLLVSVGLRDGVQVQSYSISQLDIFSQETPLDMAPASFDDQYAGCLADMTAALPDLNHSEFQ
ANKVYADGWAQANNQWQERRAWGSVWGSLPPSPPGFRDEHGVALLAYTANSPLHKEFNAAVREAGRSRAH
YLHHFSFKTLHFLLTEALQLLRSHRSRGCQQVYRGVHGLRFRPAGPGATVRLGGFASASLKNVAAQQFGE
DTFFGIWTCLGAPIRGYSFFPEEEEVLIPPFETFQVINTSRPTQGPARIYLRALGKRSTYNCEYIKEKKC
RSGPCWLGSSAPGSISASCSLLLLLLFLVLSALPENPGLQQLTRC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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