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Report for CCDS21414.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21414.1 Public Mus musculus 7 Tlnrd1 23 108 98 CCDS HistoryNCBI Gene:80889Re-query CCDS DB by CCDS ID:21414.1Re-query CCDS DB by GeneID:80889See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21414.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000094216.4 ENSMUSP00000091769.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000094216.4Link to Ensembl Protein Viewer:ENSMUSP00000091769.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000094216Re-query CCDS DB by Protein ID:ENSMUSP00000091769
Original member Current member NCBI NM_030705.4 NP_109630.1 Accepted alive Link to Nucleotide Sequence:NM_030705.4Link to Protein Sequence:NP_109630.1Re-query CCDS DB by Nucleotide ID:NM_030705Re-query CCDS DB by Protein ID:NP_109630Link to BLAST:NP_109630.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_109630.1 362 Q9ERE8 362 100% 0 0

Chromosomal Locations for CCDS 21414.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 83882133 83883221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1089 nt):
ATGGCTAGCGGCAGCGCCGGGAAGCCCACTGGCGAGGCGGCTTCTCCGGCTCCTGGGAGCGCCGTCGGCG
GGGCCAGCTCGCAGCCGCGGAAGAGGCTGGTATCTATCTGTGATCACTGCAAGGGCAAGATGCAGCTGGT
GGCCGACCTGCTGCTGCTGTCTAGCGAGGCGCGGCCGGTGCTCTTCGAAGGCCCCGCCTCCCCTGGCGCT
GGTGCGGAGTCCTTCGAGCAGTGCCGGGACACCATCATCGCGCGCACTAAGGGGCTGTCCATCCTCACCC
ACGACGTGCAGAGCCAGCTCAACATGGGCCGCTTCGGAGAGGCGGGAGACAGTCTTGTGGAACTGGGCGA
CTTGGTGGTGTCGCTGACCGAGTGTTCTGCACATGCGGCCTACCTGGCAGCCGTGGCCACACCGGGCGCT
CAACCTGCACAGCCAGGCCTTGTGGACCGCTACCGTGTGACACGCTGCCGCCACGAGGTAGAACAAGGCT
GTGCTGTGCTGCGAGCCACCCCACTGGCGGACATGACCCCACAGCTGTTGCTGGAGGTGTCGCAGGGCCT
GTCTCGAAACCTCAAGTTCCTGACGGATGCGTGCGCCCTGGCCAGTGACAAGTCACGGGACCGCTTCTCT
CGCGAACAGTTCAAGCTGGGCGTCAAGTGCATGAGCACAAGTGCATCCGCGCTGTTAGCATGCGTACGCG
AAGTGAAGGCGGCACCCAGCGAGCTGGCCCGCAGTCGTTGCGCGCTCTTCAGTGGGCCCTTGGTGCAGGC
GGTGAGCGCTTTGGTGGGCTTTGCCACCGAGCCTCAATTCCTGGGTCGCGCAGCTGCCGTGAGCACTGAG
GGCAAGGCGGTGCAGACCGCCATCCTGGGAGGTGCCATGAGTGTGGTGTCGGCCTGCGTGCTCTTGACCC
AGTGCCTCAGGGATCTGGCGCAGCACCCAGATGGGAGCGCCAAGATGTCGGACCACAGGGAGAGGCTGAG
GAACTCGGCCTGCGCCGTGTCTGAAGGCTGCACCCTGCTATCTCAGGCTTTAAGGGAAAGGTCTTCACCC
AGGACTTTACCGCCAGTGAATTCCAATTCTGTGAATTAG

Translation (362 aa):
MASGSAGKPTGEAASPAPGSAVGGASSQPRKRLVSICDHCKGKMQLVADLLLLSSEARPVLFEGPASPGA
GAESFEQCRDTIIARTKGLSILTHDVQSQLNMGRFGEAGDSLVELGDLVVSLTECSAHAAYLAAVATPGA
QPAQPGLVDRYRVTRCRHEVEQGCAVLRATPLADMTPQLLLEVSQGLSRNLKFLTDACALASDKSRDRFS
REQFKLGVKCMSTSASALLACVREVKAAPSELARSRCALFSGPLVQAVSALVGFATEPQFLGRAAAVSTE
GKAVQTAILGGAMSVVSACVLLTQCLRDLAQHPDGSAKMSDHRERLRNSACAVSEGCTLLSQALRERSSP
RTLPPVNSNSVN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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