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Report for CCDS21391.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21391.1 Public Mus musculus 7 Sema4b 23 108 98 CCDS HistoryNCBI Gene:20352Re-query CCDS DB by CCDS ID:21391.1Re-query CCDS DB by GeneID:20352See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21391.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000032754.8 ENSMUSP00000032754.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000032754.8Link to Ensembl Protein Viewer:ENSMUSP00000032754.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000032754Re-query CCDS DB by Protein ID:ENSMUSP00000032754
Original member Current member EBI ENSMUST00000205822.1 ENSMUSP00000145622.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000205822.1Link to Ensembl Protein Viewer:ENSMUSP00000145622.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000205822Re-query CCDS DB by Protein ID:ENSMUSP00000145622
Original member NCBI NM_001360135.1 NP_001347064.1 Updated not alive Link to Nucleotide Sequence:NM_001360135.1Link to Protein Sequence:NP_001347064.1Re-query CCDS DB by Nucleotide ID:NM_001360135Re-query CCDS DB by Protein ID:NP_001347064
Current member NCBI NM_001360135.2 NP_001347064.1 Accepted alive Link to Nucleotide Sequence:NM_001360135.2Link to Protein Sequence:NP_001347064.1Re-query CCDS DB by Nucleotide ID:NM_001360135Re-query CCDS DB by Protein ID:NP_001347064Link to BLAST:NP_001347064.1
Original member NCBI NM_013659.4 NP_038687.2 Updated not alive Link to Nucleotide Sequence:NM_013659.4Link to Protein Sequence:NP_038687.2Re-query CCDS DB by Nucleotide ID:NM_013659Re-query CCDS DB by Protein ID:NP_038687
Current member NCBI NM_013659.5 NP_038687.2 Accepted alive Link to Nucleotide Sequence:NM_013659.5Link to Protein Sequence:NP_038687.2Re-query CCDS DB by Nucleotide ID:NM_013659Re-query CCDS DB by Protein ID:NP_038687Link to BLAST:NP_038687.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001347064.1 823 Q62179 823 100% 0 0
NP_038687.2 823 Q62179 823 100% 0 0

Chromosomal Locations for CCDS 21391.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 80198653 80198770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 80212796 80212959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 80213263 80213325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 80215624 80215722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 80216329 80216440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 80216730 80216843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 80216948 80217099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 80218883 80219064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 80219186 80219336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 80220121 80220331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 80220442 80220557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 80220788 80220954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 80223934 80224016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 80224596 80225335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2472 nt):
ATGGGCCGGGCGAGCCGCTCCGCTGTCCTGCGGCGCGCGCTGCTGCTGCTGCTGCTACTGCTGCTGCTGC
GGACGACGACTACGCGGGCGCTCGGCCCCCGGATCAGTGTGCCGCTGGGCTCTGAAGAAAGGCTGATTAG
AAAATTTGAAGCTGAAAACATCTCCAACTACACGGCCCTTCTGCTGAGCCAGGATGGCAAGACGCTGTAT
GTGGGGGCCCGAGAGGCCCTCTTTGCACTTAACAGCAACCTCAGCTTCTTGCCAGGCGGGGAGTACCAAG
AGCTGCTGTGGAGTGCAGATGCTGACAGGAAGCAGCAGTGCAGCTTCAAGGGCAAGGACCCAAAGCGTGA
CTGTCAAAACTACATCAAGATCCTCCTGCCACTCAACAGCAGCCACCTGCTCACCTGTGGCACGGCCGCC
TTCAGCCCCCTGTGTGCTTACATTCACATAGCGAGCTTTACTTTAGCCCAAGATGAGGCCGGCAATGTCA
TTCTGGAGGATGGCAAGGGTCGTTGTCCCTTTGACCCCAACTTCAAGTCCACGGCTCTGGTGGTTGATGG
TGAGCTGTACACTGGAACAGTCAGTAGCTTCCAGGGAAACGACCCAGCCATTTCCCGGAGCCAGAGTTCC
CGCCCCACCAAGACTGAGAGCTCCCTCAACTGGCTACAAGACCCTGCCTTTGTGGCCTCGGCCTACGTCC
CCGAGAGCCTGGGCAGCCCCATAGGTGATGATGATAAGATCTACTTCTTCTTCAGCGAGACGGGCCAGGA
GTTTGAGTTCTTTGAGAACACCATCGTGTCCCGAGTTGCCCGAGTCTGTAAGGGCGATGAGGGTGGAGAG
CGGGTGTTGCAGCAACGCTGGACCTCCTTTCTCAAGGCTCAGCTCCTGTGCTCCCGGCCTGATGATGGCT
TTCCCTTTAACGTGCTACAAGATGTCTTCACCCTGAACCCCAACCCTCAGGATTGGCGCAAGACCCTTTT
CTATGGGGTCTTTACCTCCCAGTGGCACAGAGGGACCACAGAAGGCTCTGCCATCTGCGTCTTCACCATG
AATGATGTGCAGAAGGCCTTTGACGGCCTGTACAAGAAAGTAAACAGAGAGACACAGCAGTGGTATACCG
AGACCCACCAGGTGCCCACACCGCGGCCGGGAGCGTGCATTACCAACAGTGCCCGGGAACGGAAGATCAA
CTCGTCCCTGCAGCTCCCAGACCGAGTGCTGAACTTCCTCAAGGATCACTTCTTGATGGATGGGCAGGTC
CGCAGTCGCCTGCTGCTGCTGCAGCCCAGAGCCCGCTACCAGCGTGTGGCTGTGCACCGTGTGCCTGGCC
TGCACAGCACTTATGATGTCCTATTTCTGGGCACTGGTGATGGCCGCCTGCACAAAGCAGTGACCCTGAG
CTCCAGAGTCCACATCATTGAGGAGCTGCAGATCTTCCCTCAAGGACAGCCTGTGCAGAACCTGCTCTTG
GACAGCCATGGGGGACTGTTGTATGCCTCCTCCCATTCCGGGGTGGTGCAAGTGCCCGTAGCCAACTGCA
GCCTGTACCCAACCTGTGGAGACTGCCTCCTGGCTCGAGACCCCTACTGCGCCTGGACTGGCTCTGCCTG
CAGGCTCGCTAGCCTCTACCAGCCTGATCTGGCCTCCAGGCCATGGACCCAGGACATTGAGGGTGCCAGT
GTCAAGGAACTCTGCAAGAATTCCTCATACAAGGCCCGGTTTCTTGTGCCAGGTAAGCCATGTAAACAAG
TCCAGATCCAACCAAACACAGTGAACACCCTGGCCTGCCCACTCCTCTCAAACCTGGCCACTCGGCTCTG
GGTGCACAATGGAGCCCCAGTCAATGCCTCTGCCTCCTGCCGCGTGTTACCCACCGGGGACCTGCTGCTG
GTGGGCAGCCAGCAGGGTTTGGGGGTGTTCCAGTGTTGGTCGATAGAAGAAGGATTCCAGCAGCTTGTGG
CCAGCTACTGCCCAGAGGTGATGGAGGAGGGGGTAATGGACCAAAAGAACCAGCGTGATGGTACCCCAGT
CATTATCAACACATCACGAGTGAGTGCACCGGCTGGTGGCAGGGCCAGCTGGGGTGCGGACAAGTCCTAC
TGGAATGAATTCCTGGTGATGTGTACTCTGTTTGTGTTTGCTATGGTGCTTTTGTTTCTGTTCTTTCTCT
ACCGACATCGGGATGGCATGAAACTCTTCCTAAAGCAGGGCGAATGTGCCAGTGTGCACCCCAAGACTCG
CCCTATAGTGCTACCACCTGAGACCCGACCGCTGAATGGTGTCGGCCCTCCTAGCACCCCACTTGACCAC
CGAGGCTACCAGGCTCTGTCGGATAGCTCCCCAGGGCCCAGAGTCTTCACTGAATCAGAGAAGAGGCCAC
TGAGCATCCAGGACAGCTTTGTAGAGGTGTCTCCCGTGTGTCCCCGGCCCCGAGTTCGACTGGGCTCTGA
GATCCGAGACTCTGTGGTATGA

Translation (823 aa):
MGRASRSAVLRRALLLLLLLLLLRTTTTRALGPRISVPLGSEERLIRKFEAENISNYTALLLSQDGKTLY
VGAREALFALNSNLSFLPGGEYQELLWSADADRKQQCSFKGKDPKRDCQNYIKILLPLNSSHLLTCGTAA
FSPLCAYIHIASFTLAQDEAGNVILEDGKGRCPFDPNFKSTALVVDGELYTGTVSSFQGNDPAISRSQSS
RPTKTESSLNWLQDPAFVASAYVPESLGSPIGDDDKIYFFFSETGQEFEFFENTIVSRVARVCKGDEGGE
RVLQQRWTSFLKAQLLCSRPDDGFPFNVLQDVFTLNPNPQDWRKTLFYGVFTSQWHRGTTEGSAICVFTM
NDVQKAFDGLYKKVNRETQQWYTETHQVPTPRPGACITNSARERKINSSLQLPDRVLNFLKDHFLMDGQV
RSRLLLLQPRARYQRVAVHRVPGLHSTYDVLFLGTGDGRLHKAVTLSSRVHIIEELQIFPQGQPVQNLLL
DSHGGLLYASSHSGVVQVPVANCSLYPTCGDCLLARDPYCAWTGSACRLASLYQPDLASRPWTQDIEGAS
VKELCKNSSYKARFLVPGKPCKQVQIQPNTVNTLACPLLSNLATRLWVHNGAPVNASASCRVLPTGDLLL
VGSQQGLGVFQCWSIEEGFQQLVASYCPEVMEEGVMDQKNQRDGTPVIINTSRVSAPAGGRASWGADKSY
WNEFLVMCTLFVFAMVLLFLFFLYRHRDGMKLFLKQGECASVHPKTRPIVLPPETRPLNGVGPPSTPLDH
RGYQALSDSSPGPRVFTESEKRPLSIQDSFVEVSPVCPRPRVRLGSEIRDSVV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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