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Report for CCDS21249.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21249.1 Public Mus musculus 7 Ppp1r15a 23 108 98 CCDS HistoryNCBI Gene:17872Re-query CCDS DB by CCDS ID:21249.1Re-query CCDS DB by GeneID:17872See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21249.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000042105.10 ENSMUSP00000049488.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000042105.10Link to Ensembl Protein Viewer:ENSMUSP00000049488.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000042105Re-query CCDS DB by Protein ID:ENSMUSP00000049488
Original member Current member EBI ENSMUST00000167273.1 ENSMUSP00000128497.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000167273.1Link to Ensembl Protein Viewer:ENSMUSP00000128497.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000167273Re-query CCDS DB by Protein ID:ENSMUSP00000128497
Original member Current member NCBI NM_008654.2 NP_032680.1 Accepted alive Link to Nucleotide Sequence:NM_008654.2Link to Protein Sequence:NP_032680.1Re-query CCDS DB by Nucleotide ID:NM_008654Re-query CCDS DB by Protein ID:NP_032680Link to BLAST:NP_032680.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032680.1 657 P17564-1 657 100% 0 0

Chromosomal Locations for CCDS 21249.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 45522993 45523322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45523739 45525382 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1974 nt):
ATGGCCCCGAGCCCAAGACCCCAGCATGTCCTGCACTGGAGGGACGCCCACAACTTCTATCTCCTGTCCC
CACTGATGGGCTTGCTCAGTCGGGCCTGGAGCCGCCTGAGGGGCCCAGAAGTCCCAGAGGCATGGCTGGC
AAAAACAGTAACAGGAGCAGATCAGATAGAAGCTGCGGCTCTGCTGACACCTACCCCTGTCTCTGGTAAC
CTCCTCCCTCATGGGGAGACTGAAGAAAGTGGATCTCCTGAACAGAGTCAAGCAGCCCAGAGGCTCTGCC
TTGTGGAAGCTGAAAGTTCCCCTCCTGAAACTTGGGGACTTTCAAATGTTGATGAGTACAATGCAAAGCC
AGGACAAGATGACCTTAGAGAGAAGGAAATGGAACGCACAGCTGGCAAGGCCACACTACAGCCCGCTGGC
CTGCAAGGGGCTGATAAGAGGCTTGGGGAGGTGGTGGCTAGAGAAGAGGGAGTGGCTGAGCCCGCTTATC
CCACATCACAGCTGGAGGGTGGTCCAGCTGAGAATGAAGAGGATGGAGAAACAGTGAAGACTTACCAAGC
TTCTGCTGCTTCCATAGCTCCGGGATACAAACCCAGCACCCCTGTGCCTTTCTTGGGGGAGGCAGAACAT
CAAGCCACGGAAGAAAAAGGAACAGAAAACAAGGCTGACCCCTCCAACTCTCCTTCTTCAGGCTCCCACT
CCAGAGCCTGGGAGTACTACTCTAGAGAGAAGCCTAAGCAGGAGGGAGAAGCCAAGGTAGAGGCACACAG
GGCAGGGCAGGGTCACCCTTGTCGGAATGCTGAGGCTGAGGAAGGAGGACCTGAGACAACTTTTGTCTGT
ACTGGAAATGCCTTCCTGAAGGCCTGGGTGTATCGCCCAGGAGAGGACACAGAGGAAGAAGACAACAGCG
ATTCGGATTCAGCTGAGGAAGACACAGCTCAGACCGGTGCCACCCCCCATACAAGTGCCTTCCTGAAGGC
CTGGGTGTATCGCCCAGGAGAGGACACAGAGGAAGAAGACAGCGATTCGGATTCAGCTGAGGAAGACACA
GCTCAGACCGGTGCCACCCCCCATACAAGTGCCTTCCTGAAGGCCTGGGTGTATCGCCCAGGAGAGGACA
CAGAGGAAGAAAACAGCGATTTGGATTCAGCTGAGGAAGACACAGCTCAGACCGGTGCCACCCCCCATAC
AAGTGCCTTCCTGAAGGCCTGGGTGTATCGCCCAGGAGAGGACACAGAGGAAGAAAACAGCGATTTGGAT
TCAGCTGAGGAAGACACAGCTCAGACCGGTGCCACCCCACATACAAGTCCCTTCCTGAAGGCCTGGGTGT
ATCGCCCAGGAGAGGACACAGAAGATGACACAGAAGAGGAAGAGGACAGTGAGAATGTGGCCCCAGGTGA
CTCAGAAACAGCTGACTCAAGCCAGAGTCCCTGCCTTCAGCCCCAGCGTTGTCTACCAGGAGAGAAGACC
AAGGGACGTGGGGAAGAGCCCCCTCTCTTCCAGGTGGCCTTCTATTTACCCGGAGAGAAGCCAGAATCAC
CTTGGGCTGCACCTAAGCTGCCCCTTCGACTGCAGAGGCGGCTCAGATTGTTCAAAGCCCCCACCCGGGA
TCAGGACCCCGAGATTCCTCTAAAAGCTCGGAAGGTACACTTCGCTGAGAAAGTCACAGTCCATTTCCTT
GCTGTCTGGGCAGGACCAGCCCAAGCTGCCCGTCGAGGTCCCTGGGAGCAGTTTGCACGAGATCGAAGCC
GCTTTGCTCGACGCATTGCCCAGGCAGAGGAGAAGCTGGGTCCCTACCTTACCCCTGATTCCAGGGCCAG
AGCATGGGCACGCCTTAGAAACCCATCTCTTCCACAGTCCGAGCCTCGCTCTTCCTCTGAGGCCACTCCC
TTGACCCAAGATGTGACCACACCCTCTCCCCTTCCCAGTGAAACCCCTTCGCCCAGCCTGTACTTGGGAG
GGAGGCGGGGCTAA

Translation (657 aa):
MAPSPRPQHVLHWRDAHNFYLLSPLMGLLSRAWSRLRGPEVPEAWLAKTVTGADQIEAAALLTPTPVSGN
LLPHGETEESGSPEQSQAAQRLCLVEAESSPPETWGLSNVDEYNAKPGQDDLREKEMERTAGKATLQPAG
LQGADKRLGEVVAREEGVAEPAYPTSQLEGGPAENEEDGETVKTYQASAASIAPGYKPSTPVPFLGEAEH
QATEEKGTENKADPSNSPSSGSHSRAWEYYSREKPKQEGEAKVEAHRAGQGHPCRNAEAEEGGPETTFVC
TGNAFLKAWVYRPGEDTEEEDNSDSDSAEEDTAQTGATPHTSAFLKAWVYRPGEDTEEEDSDSDSAEEDT
AQTGATPHTSAFLKAWVYRPGEDTEEENSDLDSAEEDTAQTGATPHTSAFLKAWVYRPGEDTEEENSDLD
SAEEDTAQTGATPHTSPFLKAWVYRPGEDTEDDTEEEEDSENVAPGDSETADSSQSPCLQPQRCLPGEKT
KGRGEEPPLFQVAFYLPGEKPESPWAAPKLPLRLQRRLRLFKAPTRDQDPEIPLKARKVHFAEKVTVHFL
AVWAGPAQAARRGPWEQFARDRSRFARRIAQAEEKLGPYLTPDSRARAWARLRNPSLPQSEPRSSSEATP
LTQDVTTPSPLPSETPSPSLYLGGRRG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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